BAC Information

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BAC

Clone NameMSMg01-313G24
ChromosomeX (Build37)
Map Location 140,472,531 - 140,473,342
singlet/doubletsinglet
Overlap genenone
Upstream geneRgag1, LOC209541, Chrdl1, Pak3, Capn6, Dcx
Downstream geneLOC666628, LOC666633, LOC100039378, LOC100039243, Alg13, LOC100039407, Trpc5, LOC100039436, Zcchc16, LOC666655
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313G24.T7 (MSMg01no313_g24.b1)MSMg01-313G24.TJ (MSMg01no313_g24.g1)
ACCAG435365AG435366
length1,1931,191
length of high quality
(start - end)		824 (47 - 870)784 (83 - 866)
definitionCHROMAT_FILE: MSMg01no313_g24.b1 PHD_FILE: MSMg01no313_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:07 2005CHROMAT_FILE: MSMg01no313_g24.g1 PHD_FILE: MSMg01no313_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGGGTTGTNNNNNNNATCATTGGGCGCTATAGACTCCTATGGGAGAGG
ATCCGCGGAATTCTCCCACTATTATGGTGCGCTAAGCAATGAGTGATTTG
AGCTTTACTAAAGTTTCTTTAAGGAATGTGGATGCCATTGCATTTGGAGC
ATAGATAGTCAGAATTGAGGGTTCATCTTGGATGATTTTACCTTTCATGA
GCATTAACTGTCGCTTCTTGTCTTTTTTGATAACTTTGGGTTGGAAATTG
ATTTTATTCTATATTAGAATGGCTACTCCAGCTTATTTCTTCACACCATT
TGCTAGGAAAATTGTTTTCCAGCCATTTACTCTGAGGTAGTATCTGGATT
TGTCCCTGAGGTGGGTTTCTTTTATGCAGCAAAATGTTGTGTATTGTTTA
TATAGCCAGTCTGTTAGTCTATTTGTTTTTATTGGTGAATTGATTCCAAT
TAAGGCAACATCAGACCAACTTCTCTTATGTATATCAATGCAAAAATACT
CAATAAAATTCTTCCCAAACTAAAAGGGCTATTAGGTCCTTTTCTGATAG
TCAAAACTGCAATGAGAACTGCCAGTTTTCCTAGTGTCACTGGCTAATTG
CTCTTAGATAGTAACTAGGCTTTCTCCTACTCAGAGCACATTCCAAGAGG
TTGTATAACAATTAACCAAAGGTCATCAGAAGGGAACTAATGATTTATTA
TAGGTTCTAGGGTAAAACATAAAATATTGATTGGGTTTACCTATACAAAA
CTTCACTAATATCATAGTTATGGTTTGATAACTTCAGTGAACCTGTTGAT
CTGAGACAGTTGATGAACTTTGTAACATGTGGTCATGTATTCTGAAATAT
GTATAAGTGCTGAGGACAAAGAGACGAGGAAAATCGAGAGAAAAGATTTT
TTTTTTTGCCTTTCTCCACTTAGACTATTATTTATTTATTTTTTTCCTTT
ACCCACTTANAAGAATTTTTCCCTTTCCACACTTAGGATCTTTCTGCTTT
TCCCCTTAATAACTTTCATAAAAATATTTTAATAACTTAAAAATAACTTC
TATAACCCCTTCCCAAATTCCTTCTCTTTCAGGAACATTTGGGTTGTTGG
CTCAAAATTAAAACCCAACAATTCCGGGTGACTTTAAAAAAAGGCGGCAT
GGTTAACCCTTTTCTGGAAGGCACACGGGGTTATCCCCCCAAA

NNAAATTTTNNNNNNATATGAAGTGAGGCTGGGGCGCCXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGAATGCTTTAGCACCC
CCTTCCTTTGTTTAACTCTAATTTATCTCAGTAGTTTATATTTAAAAGCT
ATTTACTGTCAGAATATCCACTCTTTTCCTACAATAGGGGGTAACTTGTA
TTCTGGCTAATTCTGTATTCACTGTGCTGTTCTGAATTTCCAGTTGGTCT
TTTTACTTCTTTGAAAACATTAAATTTAAGTACCAGAATAATCCTGCTAG
GCATGAAGAACTTGCTGCATGGTAAAATGGGTAGGAAATTATAAGTATCG
ATTCAGATAATATATACCTTTTGAGAATTAGCTTCACATTTCTAATGTCC
GCACAAAATAGCTTTCTTGATTTAAGTTACAGTTGCTATGTTTTACTCAG
ATAATCTATAAAGGCAAAATGAGTAGTGGTTTATAAATGAAGAAACGTCT
GCTTTAAGCATGATAATATTGAAAAGAAATTACAATTTTTCACTTTGAAA
TTAAATCTCTGAAGATGATAACTTAACTTGTGTTTGGAAAAGATTTCTGT
GAATTTTTAAAAATATCATTATTAATATCAGCAGTATAAAGTTGTTCAAA
CAAAATGACTTTTATTCATTGTAAATTTAATAACGAAAATAACTGAATAG
TAGGTTTGTAGCATTTGACACAGTAATTAATATTCTTTAATAAAGCTTTT
AAATTCTGTTCATTTTCTTTGTCAGAGTACAAAGGAATAAGATTCCTTAG
AGCATTTTCACAAATATGCTTTTATTGGTTTAACTTATTGCATTGTGTAA
TAGAAAAATCCACTGTTGTCTTGGTGATTTCCAAATTTATTCTGTCTGTC
TCTGTCTCTGTCTCCATCTCTGTCTCCGTCTCCATGGCCGNCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTGGG
GGGNGNATGNGNNNNNNNNNNNNNTTTNNNNNNCNCNNNCCTTNTTNTTT
CCCTTCTTCTCTTTTNCCCCTTCTTCCTCCCCCTCTCTTCCTCTTCCTCN
CCCTTTTTTTTTTTTTTTTTCCCCCTCTTCTTTCCCTCTCCCTCTTCCNT
TTTCCCCCTCCCTTTTCTTTTTTCCCTTTCTCCCCTTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_g24.g1 MSMg01no313_g24.g1 CHROMAT_FILE:
MSMg01no313_g24.g1 PHD_FILE: MSMg01no313_g24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:07 2005
         (784 letters)



>mm_chrX_140472372_140473557
          Length = 1186

 Score =  501 bits (259), Expect = e-145
 Identities = 651/829 (78%), Gaps = 100/829 (12%)
 Strand = Plus / Plus

                                                                       
Query: 24  ctttgtttaactctaatttatctcagtagttt-atatttaaaagctatttactgtca-ga 81
           ||||||||| ||| |||||| |||||| |||| | ||||||||||||| |||||||| ||
Sbjct: 160 ctttgtttatctccaatttacctcagtggtttca-atttaaaagctatctactgtcagga 218

                                                                       
Query: 82  atatccactcttttcctacaatagggggtaacttgtatt-ctggctaattctgtattcac 140
           |  ||||||||| ||||||| |  |||||||||| |||| |||||| |||||||||||||
Sbjct: 219 a-gtccactcttgtcctacagtctggggtaacttctattcctggctcattctgtattcac 277

                                                                       
Query: 141 tgtgct-------------gt--------------------------tctgaatttccag 161
           ||||||             ||                          |||||||||||||
Sbjct: 278 tgtgcttatccccatactagtacatatcctaacttttggcttgcttatctgaatttccag 337

                                                                       
Query: 162 ttggtctttt--tacttctttgaaaacattaaatttaagtaccagaataatcctgctagg 219
            |||||||||   |  |||||||||||||| ||||||  || || |||||||||||||||
Sbjct: 338 gtggtcttttgcga--tctttgaaaacattgaatttacttatcataataatcctgctagg 395

                                                                       
Query: 220 catgaagaacttgctgcatggtaaaatgggtaggaaattataagtatcgattcagataat 279
           |||||| ||||||||||| ||||||||||  ||||||||||| ||||| ||||||| |||
Sbjct: 396 catgaaaaacttgctgcagggtaaaatggacaggaaattataggtatcaattcagacaat 455

                                                                       
Query: 280 atataccttttgagaattagctt--cacatttctaatgtcc-gcacaaaatagctttctt 336
           ||| |||||||||||||||||||  || | |||||||| || ||||||||||||||||| 
Sbjct: 456 atacaccttttgagaattagcttggca-a-ttctaatg-ccagcacaaaatagctttctc 512

                                                                       
Query: 337 gatttaagttacagttg-ctatgttt--tactcagataatctataaaggcaaaatgagta 393
            ||||||||||||| || ||||||||  |  ||||||||||||| ||||  || ||||||
Sbjct: 513 aatttaagttacag-tgactatgtttcgt--tcagataatctatcaaggttaactgagta 569

                                                                       
Query: 394 gtgg-tt-tataaatgaagaaacgtctgctttaagcatgataatattgaaaagaaattac 451
           |||| || |||| ||  | ||| | |||||||||||| | ||||||| |||||||||| |
Sbjct: 570 gtggcttgtatatat--acaaatgactgctttaagcacggtaatatttaaaagaaatttc 627

                                                                       
Query: 452 aatttttcactttgaaattaaatctctgaagatgataacttaacttgtgtttggaaaaga 511
           ||| ||||||||||||||||||| |||||||||||| |||| | || || ||||  ||  
Sbjct: 628 aatctttcactttgaaattaaatttctgaagatgattacttgatttatgattggctaatc 687

                                                                       
Query: 512 tttctgtgaattttt-----------------------aaa-aatatcattatt---aat 544
           |||||||||||||||                       ||| ||||||||||||   |||
Sbjct: 688 tttctgtgaatttttctacatacttgggaatgtttccaaaataatatcattattaaaaat 747

                                                                       
Query: 545 atcagcagtataaagttgttcaaacaaaatgacttttattcattgtaaatttaataacga 604
           |  | || |||||||||||||||| ||||| |||||||| ||| ||||||| |||||  |
Sbjct: 748 a--a-cattataaagttgttcaaataaaataacttttatgcatagtaaattgaataatta 804

                                                                       
Query: 605 aaataactgaatagta---ggtttgtagcatttgacacagtaattaatattctttaataa 661
           | ||||||||||||||     |||||||||||| |||||  ||||||||||||||  | |
Sbjct: 805 atataactgaatagtacat--tttgtagcatttaacacaacaattaatattcttttctga 862

                                                                       
Query: 662 agcttttaaattctgttcattttctttgtcagagtacaaaggaataagattccttagagc 721
           |||||||||| ||| ||||||||||||||||||||||||||||||||| ||| |||||| 
Sbjct: 863 agcttttaaaatctattcattttctttgtcagagtacaaaggaataagtttcattagaga 922

                                                            
Query: 722 attttcacaaatatgcttttattggtttaacttattgcat-tgtgtaat 769
           | ||||| | |||||||||||||| |||| |||||||| | ||||||||
Sbjct: 923 actttcatacatatgcttttattgatttatcttattgcctgtgtgtaat 971


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 784
Length of database: 1186
Length adjustment: 10
Effective length of query: 774
Effective length of database: 1176
Effective search space:   910224
Effective search space used:   910224
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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