BAC Information

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BAC

Clone NameMSMg01-313N21
ChromosomeX (Build37)
Map Location 35,169,425 - 35,169,667
singlet/doubletsinglet
Overlap genenone
Upstream geneB230333C21Rik, LOC621983, Slc25a43, Slc25a5, C330007P06Rik, Ube2a, Nkrf, Sept6, Ankrd58, Rpl39, Upf3b, 2610020O08Rik, Akap14, Ndufa1, Rnf113a1, Gm9, Rhox1, Rhox2, Rhox3, Rhox4a, LOC100039913, Rhox4b, LOC100039948, Rhox4c, EG434760, LOC546295, Rhox4d, LOC100040016, Rhox4e, LOC100040043, LOC621852, Rhox4h, LOC546294, EG621903, EG434766, Rhox4g, EG434758, LOC622301, EG622311
Downstream geneRhox6, Rhox7, Rhox8, LOC436198, Rhox9, LOC100039620, 4930525M21Rik, 4930430D24Rik, Rhox10, Rhox11, Rhox12, 1700123J19Rik, Zbtb33, 6430550H21Rik, EG665331, Atp1b4, Gm40, EG227112, Lamp2, LOC100040971, EG665352, LOC670495, Cul4b, Mcts1, C1galt1c1, EG665369, 6030498E09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313N21.T7 (MSMg01no313_n21.b1)MSMg01-313N21.TJ (MSMg01no313_n21.g1)
ACCAG435670AG435671
length1,2221,215
length of high quality
(start - end)
255 (208 - 462)246 (198 - 443)
definitionCHROMAT_FILE: MSMg01no313_n21.b1 PHD_FILE: MSMg01no313_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:04 2005CHROMAT_FILE: MSMg01no313_n21.g1 PHD_FILE: MSMg01no313_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCAGCCANNNNNNCCCATCAGTCGGCGCTAACGACTCCTATAGGGAGAGG
CACCGCGGAATTCTCACCTGGAGGAAACCCCATAGAGGCCCAGCACCTGA
AAAAATGTTCAGCATCCTTCTTTAACAGGCACCCGCAAATCAAAACAACC
CTGAGATTCCACCTCACACCAGTCAGAATGACTAAGATCAAATCTTCAGG
TGACACCCGATGCTGGCAAGGATGTGGAGAAAGAGGAACACTCCTCCAAT
GTTGGTGGGATTGCAAGGTTGTACAACCACTCTGGAAATCAGTCTGGCAG
TTCCTCAGAAAATTGGAGATAGTACTACCGGAGGATCCTGCAATACCTCT
CCTGGGCATATATCTAGAAGATGTTTCAACTGGCAAGAAGGACACATGCT
CTACTATATTCTTATTAGCCTTATTTATAATAGCCAGAAGCTGAAAAGAA
CCCAGATGTCCCTCTTCATAGGAATGGATACAGAAAATGTGGTACATTTA
CACAAAGGCGTACTACTCAGCTATTAAAAAGAATGAATTCATGAAATTCC
TAGGCAAATGGTGGACCTGGAGGGCATCATCCTGAGTGAGGTAACTCAAT
CACAAAAGAACTCACATGATATGTACTCACTGATAAGTGGATATTAGCCC
AGAAACTTAGATTCCCCAAGATATAAGATACAATTTGTGAAACTGGTGAA
ACTCTAGAAGAACGAAGACCAAACTGTGGACACTTTGCCCCTTCTTTGAA
TTGGGAACAAAACACCCATGGAAGGAGTTACAGAGACAAATTTTGGAGCT
GAAACAAAAGGACAGATTATGTAGAGACTGCCCTATCCAGCGATCCATCC
CATAATCAGCCTCCAAATACTGACACCATTGCATACCAGTAGCAAGATTT
TTCCGAAAGGACCCAGATATAGCTATCTCCTGTGAGACTATGTCGGGACC
CTACAAACCCAAAATGGATGCCCCCAGCCCGCTAAGGGATGGGACCCAGG
GCTCCCATGGAGGACCTAAAAAAAGGACCCCAGAAGCCAAAGGGAACCGC
CCCCCCAAAGGGGGAACAACCTTAAGAACCCACCAGGCCCCCCGGAACTC
CTGACCTCAGCCTGCAAAAGGATCCAAAGAAGGCCCCACTCCCCCCCCTC
CGGGAAAAAAAAGGCCCATAGGGAACCCCCACCCTTTATTAGCCCCCCCA
CAAGGGGAACCCCCCCGCCCCC
NNNCCTGCATGAAGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCACTCTCTGCGTGTGTTTGATTTTCCTTCTGA
GTCAGAACCAGGGTCCAAAGAAGCCCCTGGGGGGTAGAGGGAAAAGAGAC
CAGTGAGTGAGCTGCTTTTGCAACTCCGAGTTCTGCAATATCCCCGTGAG
GGATCCTCACTGCACCGCATGCGAGGAAGAAGAACGGAGATGGGGGTCTC
CCAGGGACAACTGAAGTAGTGATACCCAGTGCTGGCATTGTTGACCAGCT
AATGAATTTGCTTCATGCACATTGTCCTACCTCCACTCACATTAAGTCCC
CGTTTGTGACCATGAGGTTGTGTCACGATTCTTGTCATATGTGCTGATAT
TCATCATGATCTGTTAATGAATAATTGAAAGGTTGGGCTGGACCTGAGTT
TTTTTTTTCCCCCCCCCCCCANCAAANCACCCCCCCAAAAAAAAAAAGGG
GGTTGATTATAAGTTGCAGGATGAGTGTTTTTCTTTCACATCTCAAATTT
CTTTTGCATTTCTCTCTTGTGTGTGTGTTGTTGTTGTTGTTTGGTTTTTC
AAGACAGGGTTTCTCTGTATAACAGCCCTTGTCATCCTGGAACTCAATCT
GTAGAGCAAGCTGGCCTCAAACTCACAAAGATCTGCCTGCCTCTGCCTTA
TGAGTGCTGGGATTAGAGGCGGCCACCCCACCCCCAAGACTTTTTAACCC
CCTGAATTCTCTACATTAAAAACTCATCTACCCATGCTCTTTGTACAATT
TTAAAACCAGTAAAATCCCCTGTATCGAGCAGCTATATCCAAATGAAGTA
GTTGCTAACCCGCCTGCGTCGGCTCTGCATGCTGTTGACCCCAAGGGACA
CGGCCCTGAAACCCGGGTAGACCCCCCTCTGCCCCGGGGACCGGCACGGG
ATAAGGGGCGAGCACTGAAGTGCCCGGACCCCCCCTAATCTTGCCTGGGC
TCCTCCCCCTCCGGGCCCCAAAAAAAAGCCCTTCGCCCTGGCGGGGTTTT
TTTCCTCCCCCTGTTCGACGGCCCTCTAGGCCCACTAACCCTCCCGGGCT
CACTTTCCCCCGCCCCGGACCCAAGGGGGCACTTTCTGTGCCGGGCCTCA
AGAACGCCTCCCTATTCTTTCCAAAAATATTCGCCACTGGACCTCTCCCG
TCCCTCATCAAGCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_n21.g1 MSMg01no313_n21.g1 CHROMAT_FILE:
MSMg01no313_n21.g1 PHD_FILE: MSMg01no313_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:04 2005
         (246 letters)



>mm_chrX_35169225_35169870
          Length = 646

 Score =  424 bits (219), Expect = e-123
 Identities = 237/243 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagggatcctcactgcaccgcatgcgaggaagaagaacggagatgggggtctcccaggga 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 gagggatcctcactgcaccgcatgcgaggaagaaggacggagatgggggtctcccaggga 260

                                                                       
Query: 61  caactgaagtagtgatacccagtgctggcattgttgaccagctaatgaatttgcttcatg 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 caactgaagtagtgatacccagtgctggcattgttgagcagctaatgaatttgcttcatg 320

                                                                       
Query: 121 cacattgtcctacctccactcacattaagtccccgtttgtgaccatgaggttgtgtcacg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 cacattgtcctacctccactcacattaagtccccgtttgtgaccatgaggtcgtgtcacg 380

                                                                       
Query: 181 attcttgtcatatgtgctgatattcatcatgatctgttaatgaataattgaaaggttggg 240
           |||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct: 381 attcttgtcatatgtgctgagactcagcatgatctgttaatgaataattgaaaggttggg 440

              
Query: 241 ctg 243
           |||
Sbjct: 441 ctg 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)