XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
AAGCCCATGCCTGGCTCAAGAACTACCTAGGGCATGGGTAAAGGCCAGGA
AGCAAAGTTTGATTTTCCTTAGGTATTTGGCAAGCCATTCCTTGGAGACT
CCTATAATAAAACAAAACTGAGGGAAAGCACACAGATCCATTCATCGACT
AAAGCAAGGATATTGGAGCATTCATTATACAGGATGCCATGGTTCTAGGA
GACTATGTTTTCTTGAACTTTTCACCTTGGGATTGCGTCCAGGTTTTTGG
GTCCTGTCAAGTGTGTCACTACTCCAGTGGATGCAGCAAGTTTGAACTAT
CCTCGTTTTTTTGTTTGTTTGTTTGTTTGTTTGTTTTTTGTTATTCCAGA
TGAATTTGGAAACTGCTCTTTCTAAAATTATGAAGAATTGATTTGGAATT
TTGATGGGGATTGCATTGAATCTGTAGATTACATTCAGCAAGATAGCCAT
GTACCCCATTTTTAAATAGGGTTATTTGATTACCTGGAGTATAATTTCTT
GAGTTATTTGTATGTATTGGATATTAGCCCTCTATTGGATGCAGGATTGG
TCAAGATCTTTTGCAAATCTGTTGGTTGCTGTTGTGTCCTATTGACAGTA
AGGCACATATTGTTAAACTCACTTTAAAATTTTATGCTGTCATTTCAAAA
TATGAGGAATAATATTGAATATAATTGACAAAAATCAAATAACAN

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGAAAAGCCTACTTTCTAACTT
AATGTCTCAATACATTTTCAAATTCTAGATTGTATTTCATCATGTTCAGT
TGATGGTCATTGCCAGATATAGGAACAGAGATGAAGGATGGCAGTCATTT
AGGTATCACTGATAGGGATCAAAGTAGATTTTTTAAAAAATCATAGTTCA
GGCATTATGAAATATGAGCTCGAGGATAGTCGAGAGACTATATCCTGTAG
CCTGCTGTATCAATCTTTTAATAAGAAGGGACAGAGTTTTCTATCATCTC
CCTACACATGAGAAATTTGATTGCAGACACATTTTGTAATAAAATCAAAC
TTATTTTGGAGAAATAAACCCCTGTTGAAATTTATTTCTCATAATATAGT
TACTGTCTCTCACAAGATGTACATATATTGAATATGCAATCTATCTCAAG
CAATATCAGTAATTTCAAACTAGGAAAATCAAATTATAGAGTTAAAATGA
AAAGTATGGATGCTCTAAAACATCATAAGCTGAATTTTCTATTTTAAAAT
ACAGTATTACTAAAGTGATTCTGCATTTAAATCTTCCTCTCTGATACTGA
AACATTTCTACTTGAAAATATGTATAGCATTTTAAAAACAAAACTTCATT
AGAAAATATGCCTACATGAAATTTAACATATTATATACTATGATTTTCTA
AACTGA

Query= MSMg01no316_o15.g1 MSMg01no316_o15.g1 CHROMAT_FILE:
MSMg01no316_o15.g1 PHD_FILE: MSMg01no316_o15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:48 2005
         (629 letters)



>mm_chrX_42309634_42310666
          Length = 1033

 Score = 1143 bits (591), Expect = 0.0
 Identities = 621/637 (97%), Gaps = 12/637 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gattgtatttcatcatgttcagttgatggtcattgccagatataggaacagagatgaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gattgtatttcatcatgttcagttgatggtcattgccagatataggaacagagatgaagg 260

                                                                       
Query: 61  atggcagtcatttaggtatcactgatagggatcaaagtagattttttaaaaaatcatagt 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atggcagttatttaggtatcactgatagggatcaaagtagattttttaaaaaatcatagt 320

                                                                       
Query: 121 tcaggcattatgaaatatgagctcgaggatagtcgagagactatatcctgtagcctgctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaggcattatgaaatatgagctcgaggatagtcgagagactatatcctgtagcctgctg 380

                                                                       
Query: 181 tatcaatcttttaataagaagggacagagttttctatcatctccctacacatgagaaatt 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatcaatcttttaataagaaggaacagagttttctatcatctccctacacatgagaaatt 440

                                                                       
Query: 241 tgattgcagacacattttgtaataaaatcaaacttattttggagaaataaacccct---g 297
           |||||||||||||||||||||||||||||||||||||||||||||||||||    |   |
Sbjct: 441 tgattgcagacacattttgtaataaaatcaaacttattttggagaaataaa----ttttg 496

                                                                       
Query: 298 ttgaaatttatttctcataatatagttactgtctctcacaagatgtacatatattgaata 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ttgaaatttatttctcataatatagttactgtctctcacaagatgtacatatattgaata 556

                                                                       
Query: 358 tgcaatctatctcaagcaatatcagtaatttcaaactaggaaaatcaaattatagagtta 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tgcaatctatctcaagcaatatcagtaatttcaaactaggaaaatcaaattatagagtta 616

                                                                       
Query: 418 aaatgaaaagtatggatgctctaaaacatcataagctgaattttctattttaaaatacag 477
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 617 aaatgaaaagtatggatgctctaaaacatcataagctgaattttcttttttaaaatacag 676

                                                                       
Query: 478 tattactaaagtgattctgcatttaaatcttcctctctgatactgaaacatttctacttg 537
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tattactaaagtgactctgcatttaaatcttcctctctgatactgaaacatttctacttg 736

                                                                       
Query: 538 aaaatatgtatagcattttaaaaacaaaac-----ttcattagaaaatatgcctacatga 592
           ||||||||||||||||||||||||||||||     |||||||||||||||||||||||||
Sbjct: 737 aaaatatgtatagcattttaaaaacaaaacaaaacttcattagaaaatatgcctacatga 796

                                                
Query: 593 aatttaacatattatatactatgattttctaaactga 629
           |||||||||||||||||||||||||||||||||||||
Sbjct: 797 aatttaacatattatatactatgattttctaaactga 833


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1033
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1023
Effective search space:   633237
Effective search space used:   633237
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)