Query= MSMg01no317_k12.b1 MSMg01no317_k12.b1 CHROMAT_FILE:
MSMg01no317_k12.b1 PHD_FILE: MSMg01no317_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:41 2005
(660 letters)
>mm_chrX_130350389_130351448
Length = 1060
Score = 1185 bits (613), Expect = 0.0
Identities = 646/657 (98%), Gaps = 1/657 (0%)
Strand = Plus / Plus
Query: 5 gaattcctgtattgccttctctctcttttcaggtgactctgttttgcatcaacttgacaa 64
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcctgtattggtttctctctcttctcaggtgactctgttttgcatcaacttgacaa 263
Query: 65 aaactagccagcagagattcaatacaatctctattaaatgatcacagcacacaaatccat 124
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 264 aaactagccagcagagattcaatacaatctctattaaatgatcacagtgcacaaatccat 323
Query: 125 tctaaactcagacagaatctcaaacaacaaaatcaattccaaaaaaaa-gaccaagctta 183
|||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 324 tctaaattcagacaaaatctcaaacaacaaaatcaattccaaaaaaaaagaccaagctta 383
Query: 184 agaagtatcagtttctgatttaaaatcttatatcaaagctatcctaatcaaagtaccgtg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agaagtatcagtttctgatttaaaatcttatatcaaagctatcctaatcaaagtaccgtg 443
Query: 244 atgttggcatagagatagtcatatagaccagcatatcagaataagagtcccatatatagg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atgttggcatagagatagtcatatagaccagcatatcagaataagagtcccatatatagg 503
Query: 304 gactggatagctggcttagtcggtaagtgtttgctgcacaagtatgagtacctgaactca 363
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 504 gactggatagctggcttagtcggtaagtgtttgctgcacaagtgtgagtacctgaactca 563
Query: 364 agttcctgcacagatgcaaatagctaggtgcttgtgttatgcccctgtaatctcagcact 423
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agttccagcacacatgcaaatagctaggtgcttgtgttatgcccctgtaatctcagcact 623
Query: 424 gaagccacgaagatcactgggcttgctgatcagctccaagtttagtcaaagaccctgtct 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gaagccacgaagatcactgggcttgctgatcagctccaagtttagtcaaagaccctgtct 683
Query: 484 cacaataaaataaaataagatagagaagctattgatgaaaatacacaatgtcaatctctg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cacaataaaataaaataagatagagaagctattgatgaaaatacacaatgtcaatctctg 743
Query: 544 catggatgtgtctgtgagcacattttcatgcacatgtagacacagagtaaatgaatcaac 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 catggatgtgtctgtgagcacattttcatgcacatgtagacacagagtaaatgaatcaac 803
Query: 604 cttatgtgtatgattttcgacaagagtcaagtccattcagtgaaaaaggacacacac 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 cttatgtgtatgattttcgacaagagtcaagtccattcagtgaaaaaggacacacac 860
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space: 682500
Effective search space used: 682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no317_k12.g1 MSMg01no317_k12.g1 CHROMAT_FILE:
MSMg01no317_k12.g1 PHD_FILE: MSMg01no317_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:41 2005
(629 letters)
>mm_chrX_130436656_130437683
Length = 1028
Score = 1178 bits (609), Expect = 0.0
Identities = 624/629 (99%), Gaps = 1/629 (0%)
Strand = Plus / Minus
Query: 1 atctcattattcatctcattcccaacacactgcattttgatcccttcccttaacacggtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 atctcattattcatctcattcccaacacactgcattttgatcccttcccttaacacggtt 769
Query: 61 atgattttgcacacacaaaatccctccctctatccttggcccgctgagaaccacatcgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 atgattttgcacacacaaaatccctccctctatccttggcccgctgagaaccacatcgcc 709
Query: 121 tgagaggctccagctcagccagtcagaaggagtttattttccttctttgtcctcccacag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 tgagaggctccagctcagccagtcagaaggagtttattttccttctttgtcctcccacag 649
Query: 181 cttcatttgcatacatctcaataattttatactcatcacagttattgccattgttcttga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 cttcatttgcatacatctcaataattttatactcatcacagttattgccattgttcttga 589
Query: 241 cttatgcctgatccctaatagactgtgagggcctagtgggccctttcaactcttctttat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 cttatgcctgatccctaatagactgtgagggcctagtgggccctttcaactcttctttat 529
Query: 301 gtttccagtacccaccagagagcttggcacagactaggatgaggatgctcctgcaggcct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gtttccagtacccaccagagagcttggcacagactaggatgaggatgctcctgcaggcct 469
Query: 361 catgaaaagaagggcacatgagagggaataacattcccataaagcacaagaagaagatta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 catgaaaagaagggcacatgagagggaataacattcccataaagcacaagaagaagatta 409
Query: 421 tcctctgaacaaggctggtttcctgttccacaccaacactttgaaaatgaaagctatttc 480
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 408 tcctctgaacaaggctggtttcctgttccacaccaacccgttgaaaatgaaagctatttc 349
Query: 481 ctgttctcaaagcccccccccatcccagtgacattgttctccctcctacatccccgccct 540
||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 348 ctgttctcaaagcacccccc-atcccagtgacattgttctccctcctacttccccgccct 290
Query: 541 ctaccagtagttagtacttgtaggctgaccacactctgatattaatggacaagatgagtt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ctaccagtagttagtacttgtaggctgaccacactctgatattaatggacaagatgagtt 230
Query: 601 ctgcctcattcagaacacctggggttaac 629
|||||||||||||||||||||||||||||
Sbjct: 229 ctgcctcattcagaacacctggggttaac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1028
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1018
Effective search space: 630142
Effective search space used: 630142
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
