BAC Information

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BAC

Clone NameMSMg01-317L21
ChromosomeX (Build37)
Map Location 7,222,517 - 7,222,758
singlet/doubletsinglet
Overlap geneSyp
Upstream geneLOC100043937, Dgkk, Ccnb3, Akap4, Clcn5, Usp27x, 2010204K13Rik, LOC668973, Ppp1r3f, 4930524L23Rik, Foxp3, Ccdc22, Cacna1f
Downstream geneLOC632264, Lmo6, Plp2, Pdzx, Ppia-psx_14.1, Gpkow, LOC100043938, Wdr45, Praf2, Ccdc120, EG236622, Tcfe3, Gripap1, LOC100043939, Kcnd1, Otud5, Pim2, Slc35a2, Pqbp1, Timm17b, Pcsk1n, Eras, Hdac6, LOC668974, Gata1, Glod5, LOC668975, EG627737, EG632013, Suv39h1, Was, EG627782, Wdr13, Rbm3, Tbc1d25, Ebp, Porcn, Ftsj1, Slc38a5, Ssxb10, Ssxb9, Ssxb1, Ssxb2, LOC546263, Ssxb6, Ssxb3, EG627853
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317L21.T7 (MSMg01no317_l21.b1)MSMg01-317L21.TJ (MSMg01no317_l21.g1)
ACCAG437728AG437729
length729738
length of high quality
(start - end)
276 (427 - 702)242 (127 - 368)
definitionCHROMAT_FILE: MSMg01no317_l21.b1 PHD_FILE: MSMg01no317_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:47 2005CHROMAT_FILE: MSMg01no317_l21.g1 PHD_FILE: MSMg01no317_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTTTATCGGGATATTTGTTTTCTTGACATCTAGTGTTTTT
TTTTAATTTAGTTCTTTATATATCTTCAGTATTAGCCCTCTATCAGATGT
GTAGTTGGTCAAAATCTTATCCCATTCTGTAGTCTGATACTTTGCCAAAT
GACAGTGTCCTTTGCTATGCAGAAGGGTGTGTTGCATAGGTTCCCATTTA
TTCATTTTTTATCTTTGTCCCTGAATTAATGGTGTTCTGTTTAGTAAGTC
TTCTCCTATGCCAATGAGTTCTACCTTCTACCAGGTTCAGTGTATCTGGT
TATATGGGTCTTGGATCCATTTTAAGTTGAGCTTTGTGTGGGATGATAAA
TATGGATCTATTTAGAGCCCCCCATATACCACCACCCAGTTTGAATAGCA
CTATTTGTTGAAGATACTGTCTTTTTTTCCAGTGTGTGCTTCTGAATTCT
TTATCATAAATTAGGTGTCCATAGGTGTGTGGATTTATGTCTAGGTCTTC
AATTCAATTCCACTGATTAGCCTGTCTGTTTTTATGCTAATGGAATGCTG
GTTTTCTTACTATAGTACAACTTGAAATTGAGGGCAGTGATACCTGCAGC
AGTTCTTTTATTATTCAGAAATATTTTTTAGCTATCCTGGTTTTTTTTGT
TTTTCCATATGAAGTTGAATACTGTTATT
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTGGATACTCATGTTTGGAGCAGGAC
CTATCATCAGCCTTCATTTTGCCTGTTCAAAATGATACCTGAAAGGCTTG
TTACTAGCTGTAGGTCACAGAGCTTGCCACGTGACAGGATCTACGGTCAG
ACTGTTTTTAGCCGCTAGGGGGCGCCCAAGTAAGAAAACATTTCAAGATC
TTGTTCTTTTGCATGTAAGGAAATCAATTCTAAAAGGATACTGAATTTCA
GCAGCTTTGGCATGACTGGTCTGGTCCCAGTTATCCCCGCCTAATCTGAA
AGACCTCATGTTCTCCTACTGGGAACAGATATGTGGTATCCCAGTGGTTA
TAATTGTTCAACCTTCTTTTGCCCCCGAGCCTCTTCCAGGGAGCCCTCAT
GGACCAACCTCCTGACTCTCCTCCCATTCTCTCTCTCTCCCCCGTTTCCC
ATGCCAGACTGTGTCTCCCAGCTTTTCTCTTCCAGCCCGGTCAGCTTCCC
AGGGCTTACCACCGAGGTGTTGAGTCCTGAAGTCACAGGGTCCCTCAGTT
CCTTGCATGTGTTTCCTGTCTGGCGGCACATAGGCATCTCCTTGATAATG
TTCTCTGGGTCAGTGGCCATCTTCACATCGGACAGGCCTTTGGTCCAGGT
GGATGATCTAACTAGCCACATGAAATCGAACACTGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_l21.g1 MSMg01no317_l21.g1 CHROMAT_FILE:
MSMg01no317_l21.g1 PHD_FILE: MSMg01no317_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:47 2005
         (242 letters)



>mm_chrX_7222317_7222958
          Length = 642

 Score =  445 bits (230), Expect = e-129
 Identities = 239/242 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcaaaatgatacctgaaaggcttgttactagctgtaggtcacagagcttgccacgtgaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tcaaaatgatacctgaaaggcttgttactagctgtaggtcacagagcttgccacgtgaca 383

                                                                       
Query: 61  ggatctacggtcagactgtttttagccgctagggggcgcccaagtaagaaaacatttcaa 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ggatctatggtcagactgtttttagccgctagggggcgcccaagtaagaaaacatttcaa 323

                                                                       
Query: 121 gatcttgttcttttgcatgtaaggaaatcaattctaaaaggatactgaatttcagcagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gatcttgttcttttgcatgtaaggaaatcaattctaaaaggatactgaatttcagcagct 263

                                                                       
Query: 181 ttggcatgactggtctggtcccagttatccccgcctaatctgaaagacctcatgttctcc 240
           ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttggcatgactgggctgggcccagttatccccgcctaatctgaaagacctcatgttctcc 203

             
Query: 241 ta 242
           ||
Sbjct: 202 ta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)