NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGATCCG
CGGAATTCTCTAATTACCAAATAATGAAATTGTAAATTAATTGATTTCTT
TTTTATTACTATGGAACTACTAGTAGTTTTTAAAACTTTGTAAACTTTTT
CAAATTGGGAATGATGGTGTATGCATGTCTAATTGGAGAATAGTATAATT
ATTTAAAGATACATGTCCTGACATGTGTTCAAAATTTCTAGCGAAATTAA
AAAAAATACATACGAACCCCTTTTAAGCATCAGATTTGAGTAATGTACAT
ATGAAACCATGAAAAAGAGAAGCTATACAAGACCTGAACAAGTTTTGTCT
CATCAATGTCTCAGAAGGTATGTGAAGAAACTCAAAATGCCTAATTATAC
AGCTTGATTCTAAAGACAGCCGCCGCTAGGGAGCACTATTTCTTGAGGCC
CCTCCCTTCTATGAAGTAGTTAATAGCTGTTGTGGAGGAGTGACTTACGA
GATGCACCACCCTACCTGAGGATTTATGGGTCATTAATAGTTGCTATGGA
GTGGCTCATGAGGTCCTAACTTATTGAGAATCCATAGATAGTATGCAAAT
ATTTTATAAGAGAGATTAACATTTTTAGATATACCATTAGTATTTTGTTC
ATTTTCCTACAAATAATCTCTTTCCCAAGGTTCTGTTAGCAACCATAATG
AAACTCCATAAGTCAACAATAAAGTAAAAACATGAAAN

NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATT
TTTTAATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTA
TATATGTTGGATATTATTCACCTATATGATTTAGGATAGGTAAAGATCCT
TTCCCAATCTGTTGTTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCT
TGCAGAAGCTTTGGAGTTTCATGAGGTCCCATTTGTCAATTCACGATCTT
ACAGCACAAGCCATTGCTGTTCTATTCAGGAATTTTTCCCCTGTCCCCAT
ATCTTCAAGGCTTTTCCCCACTTTTTCCTCTATAAGTTTCAGTGTCTCTG
GTTATCTTTTACACTCCATATTCCATTCATGGCGCCCCCATCTACTCTCC
AAATGATTCACATCCCCACACATCCTCTTCACCCCCCTGTTTCCACATGG
ATGCCTACCCGACCTGACCTTTAAACTCCCTCTAGCCTCCATTCTCTTGA
GGGTTAGGTGCATCATCTCTGAATAACCACAGACCATGTAGTCCTCTACT
GTATTGTGTTTGAGGCCTCATATCAGCAGGTATATGCTGTCTGTTTGGTG
GTCCAGTGTTTGAGAGACCTTGGGGGTTCAGATTAATTGAGACTGCTGGT
CCTCCTACAAGATCCCCCTCTCCTCTGCTTTTTTN

Query= MSMg01no317_n16.b1 MSMg01no317_n16.b1 CHROMAT_FILE:
MSMg01no317_n16.b1 PHD_FILE: MSMg01no317_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:55 2005
         (694 letters)



>mm_chrX_43505993_43507087
          Length = 1095

 Score = 1241 bits (642), Expect = 0.0
 Identities = 675/686 (98%), Gaps = 1/686 (0%)
 Strand = Plus / Minus

                                                                       
Query: 9   gaattctctaa-ttaccaaataatgaaattgtaaattaattgatttcttttttattacta 67
           |||||||||||  || |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 894 gaattctctaacataacaaataatgaaattgtaaattaattgatttattttttattacta 835

                                                                       
Query: 68  tggaactactagtagtttttaaaactttgtaaactttttcaaattgggaatgatggtgta 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 tggaactactagtagtttttaaaactttgtaaactttttcaaattgggaatgatggtgta 775

                                                                       
Query: 128 tgcatgtctaattggagaatagtataattatttaaagatacatgtcctgacatgtgttca 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 tgcatgtctaattggagaatagtataattatttaaagatacatgtcctgacatgtgttca 715

                                                                       
Query: 188 aaatttctagcgaaattaaaaaaaatacatacgaaccccttttaagcatcagatttgagt 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 aaatttctagcgaaattaaaaaaaatacatacgaaccccttttaagcatcagatttgagt 655

                                                                       
Query: 248 aatgtacatatgaaaccatgaaaaagagaagctatacaagacctgaacaagttttgtctc 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 aatgtacatatgaaaccatgaaaaagagaagctatacaagacctgaacaagttttgtctc 595

                                                                       
Query: 308 atcaatgtctcagaaggtatgtgaagaaactcaaaatgcctaattatacagcttgattct 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 atcaatgtctcagaaggtatgtgaagaaactcaaaatgcctaattatacagcttgattct 535

                                                                       
Query: 368 aaagacagccgccgctagggagcactatttcttgaggcccctcccttctatgaagtagtt 427
           ||||||||  |  |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 534 aaagacagttgttgctagggagcactatttcttgaggcccctcccttctatgaggtagtt 475

                                                                       
Query: 428 aatagctgttgtggaggagtgacttacgagatgcaccaccctacctgaggatttatgggt 487
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 474 aatagctgttgtggaggagtgacttacgagatgcaccaccctacctgacgatttatgggt 415

                                                                       
Query: 488 cattaatagttgctatggagtggctcatgaggtcctaacttattgagaatccatagatag 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 cattaatagttgctatggagtggctcatgaggtcctaacttattgagaatccatagatag 355

                                                                       
Query: 548 tatgcaaatattttataagagagattaacatttttagatataccattagtattttgttca 607
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tatgcaaatattttataagagagattaacatttttagatataccattagtattttgttca 295

                                                                       
Query: 608 ttttcctacaaataatctctttcccaaggttctgttagcaaccataatgaaactccataa 667
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 294 ttttcctacaaataatctctttcccaaggtactgttagcaaccataatgaaactccataa 235

                                     
Query: 668 gtcaacaataaagtaaaaacatgaaa 693
           ||||||||||||||||||||||||||
Sbjct: 234 gtcaacaataaagtaaaaacatgaaa 209


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1095
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1085
Effective search space:   742140
Effective search space used:   742140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)