BAC Information

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BAC

Clone NameMSMg01-318I20
ChromosomeX (Build37)
Map Location 126,016,444 - 126,016,737
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040538, LOC100040550, LOC100040562
Downstream geneLOC100040570, LOC669120, Diap2, LOC100040092
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318I20.T7 (MSMg01no318_i20.b1)MSMg01-318I20.TJ (MSMg01no318_i20.g1)
ACCAG438321AG438322
length724729
length of high quality
(start - end)
332 (39 - 370)294 (78 - 371)
definitionCHROMAT_FILE: MSMg01no318_i20.b1 PHD_FILE: MSMg01no318_i20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:45 2005CHROMAT_FILE: MSMg01no318_i20.g1 PHD_FILE: MSMg01no318_i20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
TGTTTATCCCTAAGCCCCATTTTTTAATGGGGTTATTTGATTTTCAGGAG
TCCACTTCCTTGAGTTCTTCATATAAATTGGATATTAGTCCCCTATCTGA
TTTAGGATAAGTAAAGACCCTTTGCCAATCTGTTAGTGGCCTTTTTGTCT
TATTGACAGTGCCCTTTGCCTTACCAAAGCTTGGTAATTTTATGAGGTCC
AATTTGTCGATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTATTTAG
GAATTTTTCCCCTGTGTCCATAACTTTGAGGCTTTTCCCTACTTTTTCCT
CCATAAGTTTCAGTGTCTCTGCTTTTATGTGGAGTTCCTTGATCCACTTA
GATTTGACCGCCCCCCCCCCACATAGAAATGGATCAATTCACATTCTTCT
ACACGTTAACCACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTT
TCTTCCACTGGATGGTTTTAGCTCCCTTGTCAAGATCAAGTGACCAAAGG
TATGTGAGTTCATTTCTGGGTCTTCAATTCTATTCCATTGTTCTACTTGT
CTGCTGCTATACCAGTACCACGAAGTTTTTATCACAATTGCTCCACAGTA
CAGCTTTAGGACAGGCATGGCGTTTCTACCAGAGGTTCTTTTATCCTTGA
GAAGAGTTTTTGCTATCCTACGTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTCCTTCAATTGACCATGTT
TTGACCTCCTCCTCAGGTGCTTACAAGTACCATGATCTTCTGTCCTCATC
TACCTACTCTATAACTAACCCTAAGGATGAAGACAATTCAGTCATCATCT
GACCATGTTATATGCATTCACAGAAACTTCCCTTCTCCCAGAATGTTCTG
TTTTTCTCCCTTGGTTTATCCACTAACAGATATGCATACAGTTTTCCAAA
GGTCGAGAACAATTCAATTGTCTTTCAATCAGTCATTTTCAGACCTGGTT
TTAGAGGTTTAACTTTTTAAATCGTGTTATAATTGACCTCCTCCCCACAC
AAATGTATCCTTTACCACACCCATTCAGGGGAGAGAATAAAAGAAGTAAG
CCAACGTGAATCTATTGTGAACACTTTTTTAAAAAAGTGTGTGTGTGTGG
TTTGTGGATCAAGTGCTGTTTGGACCAAACAGTTCTCATTAAACTTTATG
AGCAAACAAAAAAGTTGAACAAAACCCAGATTTAATCAGATTTCTTGAAC
ATGGTTTCTGTATTTTTTTTTTACCCTTAAAAAATCGAAAAGTCACAGCA
GAGGGAGCTTAGTTCATTCATCCTTCAACCGACTGTACTTGAACTTGCTC
ACTGATCTTCACTCTTTGCAATCCATGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_i20.g1 MSMg01no318_i20.g1 CHROMAT_FILE:
MSMg01no318_i20.g1 PHD_FILE: MSMg01no318_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:45 2005
         (294 letters)



>mm_chrX_126016244_126016937
          Length = 694

 Score =  561 bits (290), Expect = e-164
 Identities = 293/294 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttctccttcaattgaccatgttttgacctcctcctcaggtgcttacaagtaccatgatc 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 494 tttctccttcaattgaccatgttttgacctcctcctcaggtgtttacaagtaccatgatc 435

                                                                       
Query: 61  ttctgtcctcatctacctactctataactaaccctaaggatgaagacaattcagtcatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ttctgtcctcatctacctactctataactaaccctaaggatgaagacaattcagtcatca 375

                                                                       
Query: 121 tctgaccatgttatatgcattcacagaaacttcccttctcccagaatgttctgtttttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tctgaccatgttatatgcattcacagaaacttcccttctcccagaatgttctgtttttct 315

                                                                       
Query: 181 cccttggtttatccactaacagatatgcatacagttttccaaaggtcgagaacaattcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 cccttggtttatccactaacagatatgcatacagttttccaaaggtcgagaacaattcaa 255

                                                                 
Query: 241 ttgtctttcaatcagtcattttcagacctggttttagaggtttaactttttaaa 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ttgtctttcaatcagtcattttcagacctggttttagaggtttaactttttaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)