Query= MSMg01no318_j24.b1 MSMg01no318_j24.b1 CHROMAT_FILE:
MSMg01no318_j24.b1 PHD_FILE: MSMg01no318_j24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:50 2005
(698 letters)
>mm_chrX_9128727_9129823
Length = 1097
Score = 1294 bits (669), Expect = 0.0
Identities = 687/693 (99%), Gaps = 1/693 (0%)
Strand = Plus / Minus
Query: 5 gaattccatgtatattttcttatctttcattttctgttttctttagtcactctgtgttaa 64
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 gaattccatgtat-tttttttatctttcattttctgttttctttagtcactctgtgttaa 838
Query: 65 gtgagaaaatgaaaagttgactaatggctatatattcataaagaaataaggtgaatattt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 gtgagaaaatgaaaagttgactaatggctatatattcataaagaaataaggtgaatattt 778
Query: 125 agaaagagttaaacggactcacacggcaatacattttgtgtgctgtgaatgatatctagg 184
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 777 agaaagagttaaacggactcacatggcaatacattttgtgtgctgtgaatgatatccagg 718
Query: 185 gaagccctcctagagatgcttttgtatggatagggatcattgatgttagtggccttttcc 244
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 gaagccctcctagagatgattttgtatggatagggatcattgatgttagtggccttttcc 658
Query: 245 aattaaagttgcttcttcagttaattattatgtgggagaccaagaacgacggtttaaaga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 aattaaagttgcttcttcagttaattattatgtgggagaccaagaacgacggtttaaaga 598
Query: 305 ttcaatccctttatttccatatataagttgcttttgctgcttactacatattgaaaggta 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 ttcaatccctttatttccatatataagttgcttttgctgcttactacatattgaaaggta 538
Query: 365 tttctggcatctctaattgtacttcaagacacctatcaatgattgagactcagaatagaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 tttctggcatctctaattgtacttcaagacacctatcaatgattgagactcagaatagaa 478
Query: 425 ttgaaccttctctaggaaaaacaatatgaaacaaatttaatacgtcttataccagggtta 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ttgaaccttctctaggaaaaacaatatgaaacaaatttaatacgtcttataccagggtta 418
Query: 485 gtacaaagacacatggtattcattatgttatagaaaattaggagaataagttcttgcctt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gtacaaagacacatggtattcattatgttatagaaaattaggagaataagttcttgcctt 358
Query: 545 taggatatctgagattaatttcctttgggttgcggttcaagacatggagttactatctgc 604
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 357 taggatatctgagattaatttcctttgggttgtggttcaagacatggagttactatctgc 298
Query: 605 ttctgaacattttctgtgtcatattgtacatgtagaacaggatctagatatcaacattaa 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 ttctgaacattttctgtgtcatattgtacatgtagaacaggatctagatatcaacattaa 238
Query: 665 ttagaggaaatatttctgtgtgtatatctatac 697
|||||||||||||||||||||||||||||||||
Sbjct: 237 ttagaggaaatatttctgtgtgtatatctatac 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1097
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1087
Effective search space: 747856
Effective search space used: 747856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no318_j24.g1 MSMg01no318_j24.g1 CHROMAT_FILE:
MSMg01no318_j24.g1 PHD_FILE: MSMg01no318_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:50 2005
(659 letters)
>mm_chrX_9104835_9105894
Length = 1060
Score = 1114 bits (576), Expect = 0.0
Identities = 640/662 (96%), Gaps = 5/662 (0%)
Strand = Plus / Plus
Query: 1 agctgaggtata-ggtaaggaatcttggtcagggatttgttgacgagagtccagtaggag 59
||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 agctgaggtgtaaggtaaggaatcttggtcagggatttgtcgacgagagtccagtaggag 260
Query: 60 gatcactgtgagaccaagatttaagtagaaaaacgaaggttttgtagatagtccaaagct 119
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 261 gatcactgtgagaccaagatttaagtagaaaaatgaaggttttttagatagtccaaagct 320
Query: 120 cagacagatttccatgtgaaccaataatcacatggaaatctatgtacctataggacagac 179
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 cagacagatttccatgtgaaccaataatcacatggaaatctgtgtacctataggacagac 380
Query: 180 ctgaatttcggctgcatcagttctatctataaagtaggcttgggaatacctgtcctatcc 239
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 ctgaatttcggccgcatcagttctatctataaagtaggcttgggaacacctgtcctatcc 440
Query: 240 tgagaaagtccaagaccctctggatgatacataggtgtaactgagcttagcttttgtggc 299
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgagaaagtccaagcccctctggatgatacataggtgtaactgagcttagcttttgtggt 500
Query: 300 caggggaccctctccatcactctccctcaacttcagccagtacagcagtactcaaataca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caggggaccctctccatcactctccctcaacttcagccagtacagcagtactcaaataca 560
Query: 360 aggatcctgaactat--ccctggactaatcccaaaccatcctgtgcagcaagagtggctg 417
|| |||||||| | | ||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct: 561 agaatcctgaa-t-tgccccaggactaattccaaaccatcctgtgcatcaagagtggctg 618
Query: 418 atttgtgatttggcctgcatcactgctatctgtgatgacgttgcagctttccacagctca 477
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 619 atttgtgatttggcctgcaccactgctatctgtgatgacgttgcagcttcccacaactca 678
Query: 478 tgagatacacagaacccagcttaccacaaaccaagatgaccaatattctactttcaccaa 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tgagatacacagaacccagcttaccacaaaccaagatgaccaatattctactttcaccaa 738
Query: 538 caatataccaaatttaggcaacatggtatagtgcacggctcgactcatggatgagtagca 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 caatataccaaatttaggcaacatggtatagtgcacggctcgactcatggatgagtagca 798
Query: 598 cagagtaataaacacgtaagtctttgccctggagcctgcttagtggctgaagccacacat 657
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 cagagtaataaacatgtaagtctttgccctggagcctgcttagtggctgaagccacacat 858
Query: 658 gg 659
||
Sbjct: 859 gg 860
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1060
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1050
Effective search space: 681450
Effective search space used: 681450
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
