BAC Information

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BAC

Clone NameMSMg01-319B14
ChromosomeX (Build37)
Map Location 108,869,003 - 108,869,241
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043316, Pou3f4, Cylc1, LOC100042872, Rps6ka6, EG664791, D030011N01Rik
Downstream geneLOC100038989, Tex16, LOC622570, 4933403O08Rik, EG385407, Apool, Satl1, EG623341, 2010106E10Rik, Zfp711, Pof1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319B14.T7 (MSMg01no319_b14.b1)MSMg01-319B14.TJ (MSMg01no319_b14.g1)
ACCAG438715AG438716
length718718
length of high quality
(start - end)
241 (73 - 313)345 (71 - 415)
definitionCHROMAT_FILE: MSMg01no319_b14.b1 PHD_FILE: MSMg01no319_b14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:23 2005CHROMAT_FILE: MSMg01no319_b14.g1 PHD_FILE: MSMg01no319_b14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGCTGGGCGGAATTC
TGGTAGCATGGCAACAATACTCTATATCTGGTTGAATTATCTTAAATCAC
TTAATTTTTAAAGCACTTCATATTTACTGTAGAAATAAAAGAAAATGAAG
GCAACCTACAAGAAGAAACTGTAAGGCTATCCCAATAAGGAGAATTTCTG
AAACTCTAATGTAGAGAAGTTTCCTCATGAGTGGTTTTGAAAATATGAGA
TTTGCAGACAGCAGCCCAGTTATTTTAATTCAGGAAGTTTGTGATGTTAC
CTAATAATTTGGGTGATTCTAGNATCTTTTAAAAAGTAATGTACAAATTG
TATGATATTTTTTTTTCCTGCCGCCCGCCAGGTGTCTCCCTATCACTTCT
TCGGAGAACTTTCCACCATTTAAATGACTATGAAAACAAAGAATTTATCT
GTCTTCTGTGTCAATGGGTTTTTTAGGCTCTTGATAAATATTTCTAGTGG
AGAAGCATGAGTTAGTTTTTGATAATCATTTCTTATTTTTAAAATTGTAG
GAATTCATTTTTGTATAATTAAATTTAAAATAGGTGCATAAAACAAGACC
TATCATTCCCTGTATTTCCCCCACTCTGCTTTTAAAGAGATGAAAACATT
TACGTCTTTGACTCAAATTTTCCTAACACAATACCCTTGTTGAATTATTG
TATAATGGAATTATATTN
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAATACCCACAGGAGAAGAAACCACTTCTTT
TCTGTTTGTTTGCTTGTTTGTTGTGTATTTCTCATGCTTAGGCTGTGTAG
CCAAGGATGATCTTGAATGTCTGTTCCTCCATTCTCTGCCTCTCACATGC
CTAAATTAGTCACATGCCAATAGGCCTAGTTTGATGTGATACTAAATACC
CAATCTAGGGCCTGATTAATGCTAGGCAACCACTCCACCAACTGAGCTAC
ATCCTTATCCCTAAAGACATTTGTTCAGTGTCTATTTGAAAGAGACAATG
TGTAGTGGCTATTCCTGGTTGTTAACTTGAATATATCTGGAATGAACTAC
AATATACCACCAGCGCCCACCAGNGACCCTAACCTGGAGGCTAAGAGATA
GAACTTTCTGACCTGGATCTTGGTATGGAGATCTTGAGGCATAGTGGCTA
TGGATTCCAGAAGATTAAGACAGGGAGATCTCTGAGTTCAAGGTCATCTT
GGATTAAAGGTGTGGTGGCACACACCTTTAATCTGGGCTACACCTTCTGC
TGGAGACCATATAAGGACATTGGAAGAAGGAAGTCTCTCTCTCTTTCCTT
CGCCTGCTTGCCATGTGGGACTGAGCAACTGTTAGATCCTTGGACTTCCA
TTCACAGCTGCTACTGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_b14.b1 MSMg01no319_b14.b1 CHROMAT_FILE:
MSMg01no319_b14.b1 PHD_FILE: MSMg01no319_b14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:23 2005
         (241 letters)



>mm_chrX_108868803_108869443
          Length = 641

 Score =  455 bits (235), Expect = e-132
 Identities = 238/239 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatatctggttgaattatcttaaatcacttaatttttaaagcacttcatatttactgtag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tatatctggttgaattatcttaaatcacttaatttttaaagcacttcatatttactgtag 380

                                                                       
Query: 61  aaataaaagaaaatgaaggcaacctacaagaagaaactgtaaggctatcccaataaggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aaataaaagaaaatgaaggcaacctacaagaagaaactgtaaggctatcccaataaggag 320

                                                                       
Query: 121 aatttctgaaactctaatgtagagaagtttcctcatgagtggttttgaaaatatgagatt 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 319 aatttctgaaactctaatgtagagaagtttcctcatgagtgattttgaaaatatgagatt 260

                                                                      
Query: 181 tgcagacagcagcccagttattttaattcaggaagtttgtgatgttacctaataatttg 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tgcagacagcagcccagttattttaattcaggaagtttgtgatgttacctaataatttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)