Query= MSMg01no319_n03.b1 MSMg01no319_n03.b1 CHROMAT_FILE:
MSMg01no319_n03.b1 PHD_FILE: MSMg01no319_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:13 2005
(509 letters)
>mm_chrX_83754356_83755264
Length = 909
Score = 888 bits (459), Expect = 0.0
Identities = 500/519 (96%), Gaps = 10/519 (1%)
Strand = Plus / Plus
Query: 1 ctatggcatctgcacacttaatatgtgcatatcaccccactccccccaacacactcatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 ctatggcatctgcacacttaatatgtgcatatcaccccactccccccaacacactcatac 250
Query: 61 acacacacacacacacacacac------tcacacacacacacactcacacacactcatac 114
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 251 acacacacacacacacacacacacacactcacacacacacacactcacacacactcatac 310
Query: 115 acacatgcactcatacacacacgcacacactcatacacacacacacacacacac----tc 170
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 311 acacatgcactcatacacacacgcacacactcatacacacacacacacacacacacactc 370
Query: 171 atatacacacatacttatacaattaaaaataaattaaatcattaaaattgcacaaaatat 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 atatacacacatacttatacaattaaaaataaattaaatcattaaaattgcacaaaatat 430
Query: 231 tcaattttaacagtatattattttcttttacttcattaaattagaaataaaggtattcag 290
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 431 tcaattttaacagtatattattttgttttacttcattaaattagaaataaaggtattcag 490
Query: 291 aattggtcctaaaggaatctctgcatagatattcctggttttaaatatcatggcccccac 350
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 491 aattggtcctaaaggaatctctgcatagatattcctggttttaaatatcatggtcttgat 550
Query: 351 cacaatattaaaatattaaaattttcttaaaaattaaaagtgaaagttccatggcttctt 410
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 aacaatattaaaatattaaaattttcttaaaaattaaaagtgaaagttccatggcttctt 610
Query: 411 aaattggtcaaactcagaaagaggaagattcttcaagtggatcagaaattctctgaatat 470
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 611 aaattggtcaaactcagaaagaggaaaattcttcaagtggatcagaaattctctgaaaat 670
Query: 471 gatcagaactctataatacctctaccaattttgtgtaga 509
|||||||||||||||||||||||||||||||||||||||
Sbjct: 671 gatcagaactctataatacctctaccaattttgtgtaga 709
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 75
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space: 448601
Effective search space used: 448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no319_n03.g1 MSMg01no319_n03.g1 CHROMAT_FILE:
MSMg01no319_n03.g1 PHD_FILE: MSMg01no319_n03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:13 2005
(344 letters)
>mm_chrX_83969369_83970112
Length = 744
Score = 642 bits (332), Expect = 0.0
Identities = 341/344 (99%)
Strand = Plus / Minus
Query: 1 actccttaaactaaaaacccaggcttaattaaaatacaaatataagtatgacttttatga 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 544 actccttaaactaaaaacccaggcttaattaaaatacaaatataagtatgatttttatga 485
Query: 61 gaatataacaccttagtttaaacagtgaacacagagttcgctgaaacataccatgagaaa 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 484 gaatataacaccttagtttaaacagtgaacacagagtttgctgaaacataccatgagaaa 425
Query: 121 ttaatctggaagcatgttatactgagtagaaaactagaaatctccacaaatttgcacata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ttaatctggaagcatgttatactgagtagaaaactagaaatctccacaaatttgcacata 365
Query: 181 ggaaaggtttattctctgccaattgttccacagcaattatcctccaaacttaaaggttta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ggaaaggtttattctctgccaattgttccacagcaattatcctccaaacttaaaggttta 305
Query: 241 aaatgtaaatgtaactagtcataatttctgtggaatctctgcaggaactcagacaggatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 aaatgtaaatgtaactagtcataatttctgtggaatctctgcaggaactcagacaggatc 245
Query: 301 attgttccagtatgtgtcacaaaattttatcaacccattagctg 344
| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 actgttccagtatgtgtcacaaaattttatcaacccattagctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space: 246225
Effective search space used: 246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
