BAC Information

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BAC

Clone NameMSMg01-321P06
ChromosomeX (Build37)
Map Location 84,784,932 - 84,931,805
singlet/doubletdoublet
Overlap geneLOC667876
Upstream geneIl1rapl1
Downstream geneEG667883, LOC667891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321P06.T7 (MSMg01no321_p06.b1)MSMg01-321P06.TJ (MSMg01no321_p06.g1)
ACCAG440785AG440786
length743726
length of high quality
(start - end)
292 (76 - 367)292 (75 - 366)
definitionCHROMAT_FILE: MSMg01no321_p06.b1 PHD_FILE: MSMg01no321_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:48 2005CHROMAT_FILE: MSMg01no321_p06.g1 PHD_FILE: MSMg01no321_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,931,514 - 84,931,805)(84,784,932 - 84,785,220)
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCG
GAATTCTCCAAGATATTCCTCTGGGAATAGGGAGAACCCTCTTTGAATGA
CATTTTATTTAAAAGTGGAACAATCACAGGAGCAAATGTAGTATATTAAA
ATCTGCTTAACCTAGGCATGAGGATTTGTGTGTTTGAACTCTAAAGAAAC
AGCTTTTGCTTGATGTTAAACTATAGCCAACATTACTTGATCACTGACTC
AGTACCTAAAACCCATATAATACTTTGGCAGCGTAACATGGGTATTAAAA
TACAATTAATTTTGGTATAATGTCTATTATAATAACCATTCTAAAATTTA
AAAGTCAGAGTTGAACTGGACATTTGAGTTTGAAATTTTATAGTGAGCCT
TTTTCTCCATTTGATAACACCCCCCCCACATCACAGTGATTTCTGTTTGA
AACTTGGTCTATATTAAATAGGCACAGGTACATTGGATATTGCTGGTGAT
TCTGGTGTGATCATTGATGCTGAATTCTAACAATTATGCCTTAGCTCATC
TGCTAGCTTGTGTACGAGTTCTAAATGTTCTGTATGTCTACTTCAGGACT
AAATATTCCTATTTTTTTCTCTTTTTTTTTTTTTTCCCCTTGGTTAATTA
GGAACTTCCTCCTATTCACTTTTGCATTCGCCATCTCCCTCTAGTCCCCT
TATTATTTACACCATTCTCTTCCCCCCCTTAATATATTTATTT
AACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTATTCCCGAAATTCTTAACTACTGCTCCAGCATAGTGC
CTACTTGCTTGCTTACTTCTATGCCCTCCACCATGATGGTCACTGACTAA
ACATCTGAAATTGTAACCAAGGCCCAATTAATTATTCTTTTTTAAAGAAT
AATTCTTGATCATGGTATCTCCTCACAGCAACAGAACAGTAATTAGGACA
TTTAGCTTACTATAAATAAAAACTTAGCTTTTAGTTTCAAATTCAGTATG
TAATATCAAATTTGCTTATGAAATGATGACATGATTGAGGATAATATTGA
TTGCATACTTTGATTTATATATTATTGGCACTTATCTAGCAATAAAGAAA
CCAAATGCAGAGTTATTCCTCCCCCCACACAACAAAACAGACATTCCTTC
TTTTCATCATTTACCCATTTATTCATTTCCCATGAAATTTTCATATTTGC
AATTGGTTTTGATGTGAGTCATGTTTACACTCATTTTGCAGTCAGTTATT
CAGTACTGCACTGTCATCTATGGCTACAGAGTAATAAGGACCTAGTATTA
AATTTTAAGAACCTTATTGATCAGTAGGGGGTGCTCAGTGAAAACATATA
TAAGTAAATCTACACAATGGCCCCATCTCATGACACTTTTGTTTTAGTAT
ATACTCAAAATACGCTATGCAAATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_p06.b1 MSMg01no321_p06.b1 CHROMAT_FILE:
MSMg01no321_p06.b1 PHD_FILE: MSMg01no321_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:48 2005
         (292 letters)



>mm_chrX_84931314_84932005
          Length = 692

 Score =  526 bits (272), Expect = e-154
 Identities = 287/292 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatagggagaaccctctttgaatgacattttatttaaaagtggaacaatcacaggagcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aatagggagaaccctctttgaatgacattttatttaaaagtggaacaatcacaggagcaa 433

                                                                       
Query: 61  atgtagtatattaaaatctgcttaacctaggcatgaggatttgtgtgtttgaactctaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 atgtagtatattaaaatctgcttaacctaggcatgaggatttgtgtgtttgaactctaaa 373

                                                                       
Query: 121 gaaacagcttttgcttgatgttaaactatagccaacattacttgatcactgactcagtac 180
           |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 372 gaaacaacttttgcttgatgttaaactatagccaacagtacttgatcactgactcagtac 313

                                                                       
Query: 181 ctaaaacccatataatactttggcagcgtaacatgggtattaaaatacaattaattttgg 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 312 ctaaaacccatataatactttggcagtgtaacatgggtattaaaatacaattaattttgg 253

                                                               
Query: 241 tataatgtctattataataaccattctaaaatttaaaagtcagagttgaact 292
           ||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tataatggcaattataataaccattctaaaatttaaaagtcagagttgaact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no321_p06.g1 MSMg01no321_p06.g1 CHROMAT_FILE:
MSMg01no321_p06.g1 PHD_FILE: MSMg01no321_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:48 2005
         (292 letters)



>mm_chrX_84784732_84785423
          Length = 692

 Score =  543 bits (281), Expect = e-159
 Identities = 287/289 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttaactactgctccagcatagtgcctacttgcttgcttacttctatgccctccaccat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 tcttaactactgctccagcatagtgcctacttgcttgcttacttctatgctctccaccat 260

                                                                       
Query: 61  gatggtcactgactaaacatctgaaattgtaaccaaggcccaattaattattctttttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatggtcactgactaaacatctgaaattgtaaccaaggcccaattaattattctttttta 320

                                                                       
Query: 121 aagaataattcttgatcatggtatctcctcacagcaacagaacagtaattaggacattta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagaataattcttgatcatggtatctcctcacagcaacagaacagtaattaggacattta 380

                                                                       
Query: 181 gcttactataaataaaaacttagcttttagtttcaaattcagtatgtaatatcaaatttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcttactataaataaaaacttagcttttagtttcaaattcagtatgtaatatcaaatttg 440

                                                            
Query: 241 cttatgaaatgatgacatgattgaggataatattgattgcatactttga 289
           |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 cttatgaaatgatgacatgattgaggataatattgattgcatgctttga 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)