BAC Information

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BAC

Clone NameMSMg01-322P07
ChromosomeX (Build37)
Map Location 86,554,576 - 86,554,877
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667883, LOC667891, EG245506, LOC667911, LOC100041707, EG436213, LOC667919, LOC100041727, LOC667934
Downstream genePet2, EG629419, 4932429P05Rik, LOC633246, Nanog-ps1, 4930415L06Rik, EG547215, Gm370
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322P07.T7 (MSMg01no322_p07.b1)MSMg01-322P07.TJ (MSMg01no322_p07.g1)
ACCAG441510AG441511
length752758
length of high quality
(start - end)
374 (45 - 418)304 (79 - 382)
definitionCHROMAT_FILE: MSMg01no322_p07.b1 PHD_FILE: MSMg01no322_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:01 2005CHROMAT_FILE: MSMg01no322_p07.g1 PHD_FILE: MSMg01no322_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATGGCCTTATCACAGTCCGAATTCCACTGGGCACTCCCTTGGAACT
GAAGGCCACTCAGGCTATAGACCCAGGTAAGTTAACTGGAGATCTTACCT
CTCCCTTTTCTCCTACAAACCCAATTACCAGTCTCTCCCTCGATTCTGTG
GCAGTCTACTTGCTGTGGTCACTTCTGCTGTCCCCATCTATAGTTTATTA
CTCAGATATTATTTATTCTATTCTCCTAATTCCAGTAGGTATTCCTGGGA
ACCACCAGCCAAGGCTGCTATATAAGCAAGTGGTATAGCAAAGGAGATAG
GCAAGATTCAGATTTTTGCTCTACCTCCATATACAACTTCCCAGTGTAAG
CCCCAGCTCTATATCCTCACGCGGCATTTCAGCACTCCTTGCCCCCCATT
TCCAGGAGACTAAACAGATCCTGGCAAACACCATGCTTTCCACTCCCCTG
AAGACTCCCACAGCCCTAACCCAGCACAACTCAATTACTAAGTGTCAACT
CTCAATACTTAGAAACACATTTTACCAGGGACTCCCAGTGGCCACACTTG
TGACATCTCAGAAGAATTCCCTACCAGGTCATACACAATCACTATACCTT
CCTAAGAACTCAGAAAGGGCAGTAATAATCCAGGAAAAATATGCCAAAGA
TAAAAGCAGTTGTCAGCACCAAGATGTACCATATTCTCAAACACAGATGC
TN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACTATGTTACCCAGGCAGGCCT
CATAACTGTGATTCTCCTGCTCCAACCTCCCATGTATTGAAAAATACTGA
TGTATGCTACAATGCCAAGCATTTCTTTTTGTTTCATGATTCTATGACAA
TGAGTTCTTTCACATTCCCAAGGAAATGGCTAATTTATTACCCTAGTATC
ATATTCCAAATCACAGATGAAAGGAGTGTTTTCCATGCAAAATAATATAA
ATTTAATCTTAAATCTCATGTATAAAAGAGAATAAATTAATTAACTGAGA
TTCTGAAATTACCTCTAACCTAATAAATTACCTATATTTAAAATATTAAA
AATACCAAATAACATAAATATTACGCATATTGTAATGTCATCAGTCCCAC
ATTGACCTTCTACTGCTTTAAAGATTTTTTTAAATTTAAAGTGAAGAATT
ATTCAGACATTCTCAGTGGTTTCAGGACTGAGTTGATTTAAATAAAAATG
GCCCCCATATGACCATAGGGACTGGCACTAGTATAAGTGTGGCCTGTTGG
AGTATGTGTGGCTTTGTTGAACGAAGTGTGGCACTGAAGGCAAGTTTTGA
AGTGTTGGATGCTAAATTCCTTCCTGTGTGTCTAAGTCTCTTCCTGCCTG
CAGATCCAGATGAATAACTCTCACATACCTCTCCAGCATCATGTTAGTCT
GCATGCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_p07.g1 MSMg01no322_p07.g1 CHROMAT_FILE:
MSMg01no322_p07.g1 PHD_FILE: MSMg01no322_p07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:02 2005
         (304 letters)



>mm_chrX_86554376_86555079
          Length = 704

 Score =  569 bits (294), Expect = e-166
 Identities = 300/302 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actatgttacccaggcaggcctcataactgtgattctcctgctccaacctcccatgtatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actatgttacccaggcaggcctcataactgtgattctcctgctccaacctcccatgtatt 260

                                                                       
Query: 61  gaaaaatactgatgtatgctacaatgccaagcatttctttttgtttcatgattctatgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaaaatactgatgtatgctacaatgccaagcatttctttttgtttcatgattctatgac 320

                                                                       
Query: 121 aatgagttctttcacattcccaaggaaatggctaatttattaccctagtatcatattcca 180
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 321 aatgagttctttcacattcccaaggaaatggctaatttatcaccctagtatcatgttcca 380

                                                                       
Query: 181 aatcacagatgaaaggagtgttttccatgcaaaataatataaatttaatcttaaatctca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatcacagatgaaaggagtgttttccatgcaaaataatataaatttaatcttaaatctca 440

                                                                       
Query: 241 tgtataaaagagaataaattaattaactgagattctgaaattacctctaacctaataaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtataaaagagaataaattaattaactgagattctgaaattacctctaacctaataaat 500

             
Query: 301 ta 302
           ||
Sbjct: 501 ta 502


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space:   205025
Effective search space used:   205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)