CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTTATTTACGATTCTGCGTCTCTAATCACAAATGAGGTTTAGTT
TACATGATTCTCTTTACTTGTGACATCTTTGTGAGATCTCAGTATCAGTG
GTATATTTACTTCATAAAGCTTTAAAAGTGGGCTGGGCATGGTGGCACAT
GCCTTTAATCTCAGTGCTTAGGAGGTAGATATAGGAGAATCTTTATGAGT
TCGAGGCCAGCCTGGTCTACAGAGCAAGTTCTAGGACAGCCAAGATTTTT
ACACAGAAAAACCCTTTCTCAAAACAAAACAACCCAAAAAAAAATTCAAA
GTGTTAAAAGTGTTCTTTAGGTATAGCTTAATGGAAAAGCGTTTTCCCAA
CATGAACAAGGCCTGGCCCCCGATCCCTTGCATAGAACAAAATCATTGGG
ATTATGTGCTTTTTTGGTGTCAATGGGCCTCCCCATGTACAAAGATCTTG
GACCAGTACTTTGGGGTGGTAGATAGCTCCTTATAACTAACTATCTCTGT
GTCTTCTAAGAACATTGTTCTATATGGAAGTTTTGCCTTTTTAGGGTCAC
TCTGGTACACATTTTCCTATGACATTATCCATTTCTTCCTGGTCTTTGAA
ACCTTTTGCATGGAGTTACATAAAGGTTTCATGGGTGGGCATGATGCTAC
ATTTCTCCAAATCCTGCACTCAGGAGTCTAAGGCTAGAAAGCACAGC

TGGAGGCGCCTGTTTCAAACCCGAGGNGAANCANAGAATTTACCNGACCG
GCAGAAGCAGCNGNNNCNNCNGGGGACCCAAGGCAACAANNAANNCCCAC
CCCNCNNCCAACNNNCNAGAGGGAANCNGCANCCNNNGGCNNGGNGACCN
AANCCGGCAACAGCANCACNCCAAACCCGGCNNNAANNCANAGANCNNNC
NCAAANGANNGCCAACCGGCNNNCCNCCTTATAAAGACNGGCGANNAGAN
AAAACAAGNNAAANNCACAANNNCCANCNCNAACNGAGCCNCATTATTTT
TTTTTGNNNNAACCAAGNAACGNNGAAGCCAGGGCATCTTTGAGACCCCC
CCCACCCAGCCNACAACACANANCAANNCCNNNCNCNGGCGGGCCGAACC
CAAGCCCACAAANAACCAAAAACAACCCAGAAAACAANNAAGGAACCAAG
GACACNNCCCAGACNAGACNNGCCCCNNNCCACCANCACCCNCGGNCANN
GNGCAAAAGCAACCGGCCCCGGCCCAGACCCAACCCAAGAACACAACCCG
CCAAGCAAAGAAACCAGCAAANANNCGAGCAAGCCCCACCANNCCCAGAA
NCAAGAAGAACCCCCGAGCCCCGGGCCAACACTTTTTATTTATGACTGGA
TCTGACAAAGACAACAGGAAATACAACCACCTAGCATTGGGATGAGCTTT
AATGCAATTAACCATATTCATTTCAT

Query= MSMg01no324_g24.b1 MSMg01no324_g24.b1 CHROMAT_FILE:
MSMg01no324_g24.b1 PHD_FILE: MSMg01no324_g24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:45 2005
         (698 letters)



>mm_chrX_147460608_147461704
          Length = 1097

 Score = 1116 bits (577), Expect = 0.0
 Identities = 666/713 (93%), Gaps = 31/713 (4%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgttatttacgattctgcgtctctaatcacaaatgaggtttagtttacatgatt 64
           ||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 193 gaattctgttagttaggaatctgcgtctctaatcacaaatgaggtttagtttacatgagt 252

                                                                       
Query: 65  ctctttacttgtgacatctttgtgagatctcagtatcagtggtatatttacttcataaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ctctttacttgtgacatctttgtgagatctcagtatcagtggtatatttacttcataaag 312

                                                                       
Query: 125 ctttaaaagtgggctgggcatggtggcacatgcctttaatctcagtgcttaggaggtaga 184
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 313 ctttaaaagtgggctgggcatggtggcacatgcctttaatcccagtgcttaggaggtaga 372

                                                                       
Query: 185 tataggagaatctttatgagttcgaggccagcctggtctacagagcaagttctaggacag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tataggagaatctttatgagttcgaggccagcctggtctacagagcaagttctaggacag 432

                                                                       
Query: 245 ccaagatttttacacagaaaaaccctttctcaaaacaaaacaacccaaaa---------- 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||          
Sbjct: 433 ccaagatttttacacagaaaaaccctttctcaaaacaaaacaacccaaaacaaacaaaca 492

                                                                       
Query: 295 --------aaaaattcaaagtgttaaaagtgttctttaggtatagcttaatggaaaagcg 346
                   |||||  |||    || |||||||||||| ||||||||||||||| ||||||
Sbjct: 493 aacaaacaaaaaa--caa----ttcaaagtgttctttgggtatagcttaatggcaaagcg 546

                                                                       
Query: 347 ttttcccaacatgaacaaggcctggcccccgatcccttgcatagaacaaaatcattggga 406
           |||||||||||||||||||||||||  |  ||||||||||||||||||||||||||||||
Sbjct: 547 ttttcccaacatgaacaaggcctggggcttgatcccttgcatagaacaaaatcattggga 606

                                                                       
Query: 407 ttatgtgcttttttggtgtcaatgggcctccccatgtacaaagatcttggaccagtactt 466
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 ttacgtgcttttttggtgtcaatgggcctccccatgtacaaagatcttggaccagtactt 666

                                                                       
Query: 467 tggggtggtagatagctccttataactaactatctctgtgtcttctaagaacattgttct 526
           ||||||||||||||||||||||||||||    ||||||||||||||||||||||||||| 
Sbjct: 667 tggggtggtagatagctccttataacta----tctctgtgtcttctaagaacattgttcc 722

                                                                       
Query: 527 atatggaagttttgcctttttagggtcactctggtacaca---ttttcctatgacattat 583
           ||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||
Sbjct: 723 atatggaagttttgcctttttagggtcactctggtacacaacattttcctatgacattat 782

                                                                       
Query: 584 ccatttcttcctggtctttgaaaccttttgcatggagttacataaaggtttcatgggtgg 643
           |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 783 ccatttcttcctggtctttgaaaccttttgtatggagttacataaaggattcatgggtgg 842

                                                                
Query: 644 gcatgatgctacatttctccaaatcctgcactcaggagtctaaggctagaaag 696
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 gcatgatgctacatttctccaaatcctgcactcaggagtctaaggctagaaag 895


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1097
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1087
Effective search space:   747856
Effective search space used:   747856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)