TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATGGGACAAGGAAATAACTGGTTGATAGAAAGTGTCCCTGAGTTTCTGA
ATGATGCAAGCCTTTATTGCTGCATAGCCAAAGGGAAACAGAAATCTTTC
ACAAAAATCAAAGAGAGGAGCCAAATAAACACCTTTCATCTAGCAAGATC
AAAAACTGCTCTTAGAAAACTGGCAAAGTGTACAAAACAGGCAAAACAAG
TTTCTGTGTCAGTAAAGTAGGATCTTCACTTATAGCCTCAATTTTACACT
TTCTCAGTGTACCAATTTCTATAAAACATGACCTTTCAAAGAATCAGCTT
GACTAAGTGTTTAATAAACAATCCTGTGCAACTATATTCCAGCTGCATCA
TTGGACTCAAACTGAATTTTCCATGTGTTGCCACTGATGTGAGCCATTAT
CCTGTTGTGCTTCAGGAGATTTATATGACCTTCAACAAGCAATCCAAATA
TGAAAATGAATAAGAACCCAACTTGCTAACTGTGACAGACAAAACAATTC
TTTAAGGCCACTAGTGCTACATTCAGGAGTCCAACTTTGTCTGTGTTCTG
AATCTAGTCAAAAACAGTTAAAATATTGGAAATAAAACTTGCATCTGTAC
TATAAATAGATTAGTTTTGCCCTTATTCTCTGAACAATAACATGTTAATT
GCACAGTAATATTTCAGTAAGTATTAGTCATTCAGAGA

AAAAACCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCTCCGTGGCTGCAGCAAG
GTGCAAGTCATCAGCACATTGAAGCAGAGTTATCTGGCAGTTTTCAGCTC
AGAAGGAGGCTAAATCTCGATGTAGAGACTTATGAAAAAGGGTGGGGGAG
TTTTTGAACCCCTGGGGTAACCGCTTCAAAGTCAATTGTCCCATTTGTCC
CATGTCAAAATCTCTCCACTCAAAGGGGAATATGGGCTGGCTGGAGGGAT
GTAACTTCAGGCAAAAGAAAGCATTTTTTAAATCAAGTACTGTGTATCAT
TTTTGCTTTGGAGGGAGTGAGCTGAGGAGGTTATAGAGATTAGGAACAGC
TGGTTAAAAGTCTTGAACCCTCTTATTGACCTCTCTCAGGTCTTGGGCTG
GTCGATAGTCACTGGTGCCAGGTTTCTTTGCCAGCAGTAGAGGAGTATTC
CAGGGTGACAGGAAAGGTACCAAAATACATAATTGTAATAGTCTATGAAT
GTATGGCCTGATTCTATCTCTTACTCCACTGCTCATCGGGTATTGTTGCA
CTCCTATAGGGGTTGCATCCGTTTTCAGTCCCACAACCACAGGGAGAACT
CTGACAGCCATTCCCATTCCTCCAGTCTCTGCCCATGCTCTAGGGAAAGC
ACTCAACCAATTTTTAGGTCTAGCACCTCCGTTTGCTTTATGN

Query= MSMg01no324_j22.b1 MSMg01no324_j22.b1 CHROMAT_FILE:
MSMg01no324_j22.b1 PHD_FILE: MSMg01no324_j22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:58 2005
         (693 letters)



>mm_chrX_140471381_140472480
          Length = 1100

 Score =  607 bits (314), Expect = e-178
 Identities = 567/656 (86%), Gaps = 27/656 (4%)
 Strand = Plus / Minus

                                                                       
Query: 57  tgatgcaagcctttattgctgcatagccaaagggaaacagaaa-tctttcacaaaaatca 115
           ||||||||| ||| || ||||  |||||| ||||||||||||| || |||||||||||||
Sbjct: 888 tgatgcaaggcttcatggctgtgtagccagagggaaacagaaattc-ttcacaaaaatca 830

                                                                       
Query: 116 aagagaggagccaaataaacacctttcatctagcaagatcaaaaactgctcttagaaaac 175
           ||||||| | ||||| |||| ||||||||| |||||||||||||| | |||  |||||||
Sbjct: 829 aagagagcacccaaacaaacccctttcatccagcaagatcaaaaaattctcaaagaaaac 770

                                                                       
Query: 176 tggcaaagtgtacaaaacaggcaaaacaagtttctgtgtcagtaaagtaggatcttcact 235
           |||||| |||| |  |||| ||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 769 tggcaaggtgtgc--aacaagcaaaccaagtttctctgtcagtaaagtaggatcttcact 712

                                                                       
Query: 236 tatagcctcaattttacactttctcagtgtaccaatttctat-aaaacatgacctttcaa 294
           ||||||||||||||||| ||||||| ||||||||||| || | |||||||||| ||||||
Sbjct: 711 tatagcctcaattttactctttctcggtgtaccaattgctgtcaaaacatgacatttcaa 652

                                                                       
Query: 295 agaatcagcttgactaagtg-ttt-aataaa-caatcctgtgcaactatattccagctgc 351
           ||||||| |||| ||||| | ||| || ||| || |  ||||||||||||||||||||||
Sbjct: 651 agaatcaacttgtctaag-gatttcaa-aaatcattt-tgtgcaactatattccagctgc 595

                                                                       
Query: 352 atcattggactcaaactgaattttccatgtgttgccactgatgtgagccattatcctgtt 411
           ||||||||||| ||| |||||   ||||||||||||||||||||||||  ||| ||||||
Sbjct: 594 atcattggactgaaagtgaatggcccatgtgttgccactgatgtgagctgttagcctgtt 535

                                                                       
Query: 412 gtg-cttcaggagatttatatgaccttc-aacaagcaatccaaatatgaaaatg-aataa 468
           ||| |||||||||| ||||||||||||| || |||||||| ||||||| ||||| |||| 
Sbjct: 534 gtggcttcaggagaattatatgaccttccaa-aagcaatctaaatatgtaaatgtaatag 476

                                                                       
Query: 469 gaacccaacttgctaactgtgacagacaaaacaattctttaaggccactagtgctacatt 528
           ||||||||| |||||||| ||||||||| | ||||| ||||||||||| |||||||||| 
Sbjct: 475 gaacccaacctgctaactttgacagacatagcaattgtttaaggccacaagtgctacatg 416

                                                                       
Query: 529 caggagtccaactttgtctgtgttctgaatctagtcaaaaacagttaaaa-tattggaaa 587
           ||||||||||||| |||||||||||||||||||| |||| |||| ||||| |||| ||||
Sbjct: 415 caggagtccaactgtgtctgtgttctgaatctagccaaacacagataaaagtatttgaaa 356

                                                                       
Query: 588 taaaacttgcatctgtactataaatagatta--gttttgcccttattctctgaacaataa 645
           || ||||||||||||||||||||  ||||||  |||||||||||||||||||| ||||| 
Sbjct: 355 tacaacttgcatctgtactataaggagattattgttttgcccttattctctgagcaatag 296

                                                                   
Query: 646 cat-gttaattgcacagtaa---tatttcagtaagtatta----gtcattcagaga 693
           ||| || | ||||||| |||   |||| ||||||||||||    |||||| |||||
Sbjct: 295 catagt-atttgcacaataacaatattgcagtaagtattatttagtcatttagaga 241


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1100
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1090
Effective search space:   744470
Effective search space used:   744470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)