Query= MSMg01no324_m18.b1 MSMg01no324_m18.b1 CHROMAT_FILE:
MSMg01no324_m18.b1 PHD_FILE: MSMg01no324_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:12 2005
(695 letters)
>mm_chrX_161800392_161801486
Length = 1095
Score = 907 bits (469), Expect = 0.0
Identities = 482/487 (98%), Gaps = 2/487 (0%)
Strand = Plus / Minus
Query: 4 ggaattccagatttacccatagcctcattggtaattatactgtttcctccctagagtaaa 63
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ggaattccagatttagtcatagcctcattggtaattatactgtttcctccctagagtaaa 428
Query: 64 agagaaaa--aaaaaagaaaaaaaaggaaaagatgttctctagtgggttatgacaagtgg 121
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 agagaaaaagaaaaaagaaaaaaaaggaaaagatgttctctagtgggttatgacaagtgg 368
Query: 122 atagactccaggagatttgaaggccgagagcccgtctgatttatcagcctagcatctcaa 181
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 acagactccaggagatttgaaggccgagagcccgtctgatttatcagcctagcatctcaa 308
Query: 182 ttctagtgtcattcctttgctcaggcagccatggtaaaggacgacactctgagcttaaac 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ttctagtgtcattcctttgctcaggcagccatggtaaaggacgacactctgagcttaaac 248
Query: 242 tacagaaatgtttttcctcaaggttctggaggaaagacatctgagatcaagctgtcaaca 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tacagaaatgtttttcctcaaggttctggaggaaagacatctgagatcaagctgtcaaca 188
Query: 302 gaattggcttcttttagagccactctctgagtgtgactttcagatggctatcttcaatct 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 gaattggcttcttttagagccactctctgagtgtgactttcagatggctatcttcaatct 128
Query: 362 gttcccttacattgtctttcttttgagtatgtctgtgtcctattttttttaaaagaaaga 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 gttcccttacattgtctttcttttgagtatgtctgtgtcctattttttttaaaagaaaga 68
Query: 422 cattaatcacacttgactaaggctcacccactgacatcattttaccatagttacttcttt 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 cattaatcacacttgactaaggctcacccactgacatcattttaccatagttacttcttt 8
Query: 482 aaaatcc 488
|||||||
Sbjct: 7 aaaatcc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1095
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1085
Effective search space: 743225
Effective search space used: 743225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no324_m18.g1 MSMg01no324_m18.g1 CHROMAT_FILE:
MSMg01no324_m18.g1 PHD_FILE: MSMg01no324_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:12 2005
(653 letters)
>mm_chrX_161636988_161638040
Length = 1053
Score = 1247 bits (645), Expect = 0.0
Identities = 651/653 (99%)
Strand = Plus / Plus
Query: 1 tctcatttcttccgttgaataaaaggaaaggaaagctcatggatgagtctgcatgcctgc 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 tctcatttcttccgttgaataaaaggaaaggaaagctcatagatgagtctgcatgcctgc 260
Query: 61 tataaactgactgcatgtattcccaaggcacaactaaggacagaagtggaagagctactt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tataaactgactgcatgtattcccaaggcacaactaaggacagaagtggaagagctactt 320
Query: 121 ggaacatttatttagatgaataagctctctttggggcatagtttatgaaaaattaaattg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaacatttatttagatgaataagctctctttggggcatagtttatgaaaaattaaattg 380
Query: 181 acagtgacagctcattgctaagtactttaacaagcccaatgttcaattgggatccaccta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagtgacagctcattgctaagtactttaacaagcccaatgttcaattgggatccaccta 440
Query: 241 atcaattggaatcttcatagtggaaaggtaaaaaagactaaggaagtgtcttcatattgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcaattggaatcttcatagtggaaaggtaaaaaagactaaggaagtgtcttcatattgc 500
Query: 301 atccagagaaataatatgaaattactggtgcctttagagttggggctctgaaggtagagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atccagagaaataatatgaaattactggtgcctttagagttggggctctgaaggtagagg 560
Query: 361 tgggaggcctatagggagtgctggtaatgaatattgtccaccttgccatttttcttattg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgggaggcctatagggagtgctggtaatgaatattgtccaccttgccatttttcttattg 620
Query: 421 tatgtaggctgatgctgtggtaccgactcatatctgactatcaacagggtacctgtcagt 480
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 621 tatgtaggctgatgctgtggtaccgactcatatctgactatcaacagggtgcctgtcagt 680
Query: 481 atctggaagatatcttcaacctaccagtaatattttcatccattttctctctatgaccag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atctggaagatatcttcaacctaccagtaatattttcatccattttctctctatgaccag 740
Query: 541 ttgtcttttctatggaaaatcctaaagtaggaaaagcaaaggacatattcatctagcaat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttgtcttttctatggaaaatcctaaagtaggaaaagcaaaggacatattcatctagcaat 800
Query: 601 tcaacaaatgactctgaggcccttctagggtgggaaactggcatgttctgagg 653
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tcaacaaatgactctgaggcccttctagggtgggaaactggcatgttctgagg 853
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space: 670649
Effective search space used: 670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
