BAC Information

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BAC

Clone NameMSMg01-324N17
ChromosomeX (Build37)
Map Location 163,469,342 - 163,469,688
singlet/doubletsinglet
Overlap genenone
Upstream geneGemin8, Gpm6b, Ofd1, Trappc2, Rab9, LOC100040795, A630018P17Rik, Egfl6, LOC100041912, LOC641660, LOC667791
Downstream geneEG667794, LOC100040850, LOC627268, Tmsb4x, Tlr8, Tlr7, Prps2, EG627311, Frmpd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324N17.T7 (MSMg01no324_n17.b1)MSMg01-324N17.TJ (MSMg01no324_n17.g1)
ACCAG442894AG442895
length763779
length of high quality
(start - end)
552 (44 - 595)514 (78 - 591)
definitionCHROMAT_FILE: MSMg01no324_n17.b1 PHD_FILE: MSMg01no324_n17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:16 2005CHROMAT_FILE: MSMg01no324_n17.g1 PHD_FILE: MSMg01no324_n17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCGCGGAA
TTCATAAGACCTTCCCTTAGTTGATTTAGAGGACCTTGTTACCCTGGTGT
CCTCCATTCCCTCTGGTCCCTGCTCCAAGGTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTTTCTCTCCCTCTGTCTCTCTCTGTCTCCCTCTG
TCTCTCTATATCTTTCTGCCTTTGTCTCTCTGTCTCTGTCTCTCTGCTTG
TCACTCTGTCTCTCTCTCTCTGTCTCTCTCCTTGTCTACCTCTGTATCTC
TTTTTCTGTCTCTTTCTGTCTTTCACTGTCTCTCTGTCTCTCTCACTGTT
TCTCTCTGTCTCTCTCTGCCTCTCTCTCTGTCCCTCCCTCTGACTCTCTG
TGTCTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGCATGATGTCTGTCT
GTGGGTCTATTAAGGAGATTGAGGCAGGAAGACCAGAAGTTCAAAGTTTG
CCTGGGCAACAGAAGACAGCTACAGTGTACTTACATATAATAGATAGATA
AATCTTTAAAAAATAACTCTGGCACTGCAATCAGATACTTTCTCAGAACA
GAAAACAGAAAGAAATGAGGGCTGAAGCTCTAAGTCAATGGTAAATGTTA
ATAAAAAAGAGACCCTCAATTCAGCCACACCTATTTCCCTTTCTTCCAAA
AAAAGACAAAACTCCCCCAAATGGGGTTCAAGAATACGAATTTGCTTCAA
AAATATTTCAAAA
NCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTAGAAAATAGTTGCCCATCCC
TGTGAGCTGGCTGGGAATCAAACCCAGTTCCTCTGCAAGGACTGCCAGTG
CTTTTAACTGCTGAGCCACCTCTCCAGCCCCTTATTTACTTTTTGACTGC
TGTGACAAAACGCCAATGCACAGAGTTCCAGAGGGTTAGATTACAGGGTG
GCAGAGGGAAAGGCAGCATGTGTCAGGCAGCTGGAGTGGTAGCTGAGAAC
TCATATCTAGAACCCCCATCAGGAATCAGAATAGACACCAAATGGCATGA
GTCTTTTGAAACTTAAAGCCCTACCCATAATGACTTACTTCTGGCATCAA
GGCCGTATCTCCTAATGCTTCCCAAATAGTCACCATCTGGGGACATGTCT
GAGTCTTAAAGGGGAGAATTCGCTGAGTTATGTTCCCCAGCTCCCTCTTT
TTAAATTCTATTTGAAATATGGTCTCATTAAGTTGCCCAGGATAGCTCAC
TGTGGCATCTAGGTAGGCCTTGAATTTGTCCCTCCTCCTGCAGAGCTGAG
ATTGCATGTGTTCATCACAATACCCGGGTTCATGTGGTACCAAAGATTTA
ACTCGCTGCCCTTATGCATGCTAGGCAAGCACTCTACCAATTGAGCTACT
TCCCAAGGCCCAACAGCAATCATTTTTGGGTTTAAATTACTAGAAAGGTG
GTTCTGCTAAGCTTTCTGTGAGTTTTTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_n17.g1 MSMg01no324_n17.g1 CHROMAT_FILE:
MSMg01no324_n17.g1 PHD_FILE: MSMg01no324_n17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:16 2005
         (514 letters)



>mm_chrX_163468775_163469688
          Length = 914

 Score =  648 bits (335), Expect = 0.0
 Identities = 344/347 (99%)
 Strand = Plus / Minus

                                                                       
Query: 168 agggtggcagagggaaaggcagcatgtgtcaggcagctggagtggtagctgagaactcat 227
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 914 agggtggcagagggaaaggcagcaggtgtcaggcagctggagtggtagctgagaactcat 855

                                                                       
Query: 228 atctagaacccccatcaggaatcagaatagacaccaaatggcatgagtcttttgaaactt 287
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 854 atctagaacccccatcaggaagcagaatagacaccaaatggcatgagtcttttgaaactt 795

                                                                       
Query: 288 aaagccctacccataatgacttacttctggcatcaaggccgtatctcctaatgcttccca 347
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 794 aaagccctacccataatgacttacttctggcatcaaggccgtctctcctaatgcttccca 735

                                                                       
Query: 348 aatagtcaccatctggggacatgtctgagtcttaaaggggagaattcgctgagttatgtt 407
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 aatagtcaccatctggggacatgtctgagtcttaaaggggagaattcgctgagttatgtt 675

                                                                       
Query: 408 ccccagctccctctttttaaattctatttgaaatatggtctcattaagttgcccaggata 467
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ccccagctccctctttttaaattctatttgaaatatggtctcattaagttgcccaggata 615

                                                          
Query: 468 gctcactgtggcatctaggtaggccttgaatttgtccctcctcctgc 514
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gctcactgtggcatctaggtaggccttgaatttgtccctcctcctgc 568


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)