TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTATAAATTTACCACAAATCACTGAATTGCGCGCTTAAGGAACAAGT
TTTATGGTATGCAGTAAATGCTAACTCAATAAAGTAGAAAAAATGAGCCG
ACTCCATGCTCTAAAAGCCTTCTCTTCCCCAAATGTGATAATATTAACAG
GGAGAGGTAAACTGATGCTGAGAAGGCAATTCTGGGATGACAGAATGAAA
ACCTCTAAAGAGCTGGGTCCTAAAAGCAGAAAGAACACTGGCCAAAAAAA
AAAAGTCAAAATCAATTTTGGAAGAAAATTAAACGCTTGCAATAAAACAT
GGAACAGTGTTTCAAGAAAAAGTAAGATTAGTAAGTAAGGCTTATAGCAT
TTCAACTTTCTATAATATCATCTCTTTCTCTGCAGCTTCAAAGCCCTAAA
AAGTGCAACATTATTGTCATTATAGAAGCTATAACCCAGCAGCACAGTTG
AACTTAGAGGGCAGAACACTTCGAGAATATTACAAAAAAAAAAATAGCCC
ATCCTCAGAAAATCTGCACTATTTCATATGCCTGGCATCCCGTGGGAAAG
CAGCATTCTGAAGACTTGTCTGTTTTTGATCTGATACCCCTTACTGTAAA
AAGAGTTCATCCCTATGGCATTTGTCAAAATTAATTGGTGGAGGTTGCAT
ACAGTACATCTGCTTGACATGGAATTAACATTGAAGACTAGAAAAGGGCC
A

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTCAGAACATCAGAAATACTTGGGAGACTTACTTGTTA
AATAACAGATTTCTATTTTTTAATTAAAAAGTTTTATTTACTTTGTGTGT
GTGTGTGTGTGTGTGTGTGTAGGACTAGGGGAGGGGGAGGAGAGAGAGGT
NNTNTTNTNNNNNNTTTTTTTTTTTTTTTTTTTTTCCCCTNNNCCNNNTT
TTTTTTTTCTCCCCCCCCCCCCCCCCCCCCCTCTCCCCCCCTTCCCCCCC
CCCCCCCCCCCCCNCCGTTTACCTCCCCTTCAAAANCCCCCGCACAAACG
CGAACCGCTTTTTTTTTTTCCCCCCCCCCCCCCTTATTATTATTTGTGCG
TTCGTTTTCTGGCGCCCCCCCTCTTTTAATTAAATCTCTTCTCCCCTTTT
CTCTTCTTCTCCTTATCTTTCTCTTCTCACTTTCAAACCACGGTCTTCCC
CTTTTTTCTCCTTTCTTGATCTCCCTGATATCCTAACTTTCTCTCATCCC
TTCTCACTAACACACATTTACTCATTTCCCTATATATATACCGACTGCCT
TTTCTCCCCCGCTTCGAAACGATTTATTATCCCCATATATCAACTATGAT
TACAACTTAGAGTCTTTTTTTTTTTTTTTTTTTNCCACACCACACGATCT
CCTTCTCATATTTTCCGTCGCGTGCCCGCGTCAGTGCTACTTTTCTTCTT
ACTTCGTATGGTCGTTCGTGGTTCT

Query= MSMg01no324_p16.b1 MSMg01no324_p16.b1 CHROMAT_FILE:
MSMg01no324_p16.b1 PHD_FILE: MSMg01no324_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:25 2005
         (692 letters)



>mm_chrX_136519539_136520630
          Length = 1092

 Score = 1268 bits (656), Expect = 0.0
 Identities = 682/692 (98%), Gaps = 4/692 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctataaatttaccacaaatcactgaattgcgcgcttaaggaacaagttttatggt 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctataaatttactacaaatcactgaattgcgcgcttaaggaacaagttttatggt 264

                                                                       
Query: 65  atgcagtaaatgctaactcaataaagtagaaaaaatgagccgactccatgctctaaaagc 124
           | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 265 acgcagtaaatgctaactcaataaagtagaaaaaatgagctgactccatgctctaaaagc 324

                                                                       
Query: 125 cttctcttccccaaatgtgataatattaacagggagaggtaaactgatgctgagaaggca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttctcttccccaaatgtgataatattaacagggagaggtaaactgatgctgagaaggca 384

                                                                       
Query: 185 attctgggatgacagaatgaaaacctctaaagagctgggtcctaaaagcagaaagaacac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 attctgggatgacagaatgaaaacctctaaagagctgggtcctaaaagcagaaagaacac 444

                                                                       
Query: 245 tggccaaaaaaaaaaa-gtcaaaatcaattttggaagaaaattaaacgcttgcaataaaa 303
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tggccaaaaaaaaaaaagtcaaaatcaattttggaagaaaattaaacgcttgcaataaaa 504

                                                                       
Query: 304 catggaacagtgtttcaagaaaaagtaagattagtaagtaaggcttatagcatttcaact 363
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 catgaaacagtgtttcaagaaaaagtaagattagtaagtaaggcttatagcatttcaact 564

                                                                       
Query: 364 ttctataatatcatctctttctctgcagcttcaaagccctaaaaagtgcaacattattgt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttctataatatcatctctttctctgcagcttcaaagccctaaaaagtgcaacattattgt 624

                                                                       
Query: 424 cattatagaagctataacccagcagcacagttgaacttagagggcagaacacttcgagaa 483
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 625 cattatagaagctataacccagcagcacagttggacttagagggcagaacacttcgagaa 684

                                                                       
Query: 484 tattacaaaaaaaaaaa---tagcccatcctcagaaaatctgcactatttcatatgcctg 540
           |||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tattacaaaaaaaaaaaaaatagcccatcctcagaaaatctgcactatttcatatgcctg 744

                                                                       
Query: 541 gcatcccgtgggaaagcagcattctgaagacttgtctgtttttgatctgataccccttac 600
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 745 gcatcccgtgggaaagcagcattctgaagacttgtctgtttttgacctgataccccttac 804

                                                                       
Query: 601 tgtaaaaagagttcatccctatggcatttgtcaaaattaattggtggaggttgcatacag 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tgtaaaaagagttcatccctatggcatttgtcaaaattaattggtggaggttgcatacag 864

                                           
Query: 661 tacatctgcttgacatggaattaacattgaag 692
           ||||||||||||||||||||||||||||||||
Sbjct: 865 tacatctgcttgacatggaattaacattgaag 896


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space:   737924
Effective search space used:   737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)