BAC Information

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BAC

Clone NameMSMg01-325J14
ChromosomeX (Build37)
Map Location 166,030,343 - 166,162,416
singlet/doubletdoublet
Overlap geneMid1
Upstream geneMsl31, Arhgap6, Amelx, Hccs, LOC100040950, BC022960
Downstream gene4933400A11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-325J14.T7 (MSMg01no325_j14.b1)MSMg01-325J14.TJ (MSMg01no325_j14.g1)
ACCAG443446AG443447
length734733
length of high quality
(start - end)		689 (46 - 734)660 (74 - 733)
definitionCHROMAT_FILE: MSMg01no325_j14.b1 PHD_FILE: MSMg01no325_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:08 2005CHROMAT_FILE: MSMg01no325_j14.g1 PHD_FILE: MSMg01no325_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(166,030,343 - 166,031,026)(166,161,757 - 166,162,416)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCCTTTCTTACCGTTTCTTTTGTTGTGGAGAATCACCATGACAAT
GGCAACTCTTATAAAGGAAGACATTTTGTTGGGGTTGACTTACCAGTACA
TTATCAACATGTCAGGAAGTATGGCAGCACACAGGCAGACATGGTGTTAG
AGAAGAGAATAAGAGTTTTATATCTGGATTGGCAGGCAGTAGGGAAAGAG
AGAAAGAGTGAGCCATTTGCCTATTTTGAGCTTCTGAAACCTTAGAGACC
AGCCTTAGTGACTCACTTTCTCCAACAAGGACACATCTACTCCACCAATG
CCACAACTCCTAATAGTGCCACTTCTATGAGCCTATAGGGGCCATTTTCA
TTCAAACCACCACATTTCCCAGGAATGTCTTAAAATTTATATGTTTTTTT
GCTGTTGATCATCTCAAAAATATGTAACATTCTGGATAACAAAGATAATA
ATAAAGCCAAGGATTCTTATTTCAAAAGCTTTGAGGAAAATGGAGTTCCT
TTATGAATTCTTAGTGTCATTAATAAAATAATTTAGGAACATAGTTGGAA
GGAAGTTCCAAGACCATTTTCTTGGAGCTTGAAAGAAAATCAACAGGACA
GGCAAACTGTAAATATCAGCATCTGCTAGAGAGGAGGGAGATTGGGAAGA
GGGAGAGATAAAGTAATTCCTTTTGACTTTGGGN

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCATTGAAATGGTTACCTTTTCTTGTT
CATTGAATTAAATTATTGCAAAAGTGAGAAAAGAAAAGAAAAGAAAAGAA
AAGTGAAGAAAACCACCCAAACCAACTCTATACAACTATTACACATTTCT
TGTGCTCTACATTCTATTCTGATGGTGAGGTAACAGTAACTGGAAGATAA
GAAAACAAATAAACTGCTAATAGAGTTTTAAAGGTATGGGATGTTACAAC
TTGTTTATTAAGTAATGCCTTTATTTCCAATTATTTATATCATGTAGTGA
TACTATTTATAGAGTAAATAAATGTATATAAATGTAGCAATGAAATCATG
GTGGGAGAGAAGAAAGGCATATAGTCTACCTGCACCATTGGAGTTAGTAT
ACATGGGAATGTATGGTGCTCATAATTGATGTAGCGGTAGGATCCTGAAC
ATCACCAGCAAATCTATTAACTAGAAAAAGGCAAAAGACTTTTCTGGAAG
ACAGGAACACAGAAACAAAGTCACCATAGCATGAGCACGAGGGAACATTT
TTATTGTGAAATAGCAAGGCATAAGGTTTGGAAACACAATCGGAAATATG
CCAACTAGGTGACTATGGGGTGAGGCAGGATGGCAAATTCAAATGGCATT
TTTTGATGTGTGTCACAGGCTGGCCCAGCTTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no325_j14.b1 MSMg01no325_j14.b1 CHROMAT_FILE:
MSMg01no325_j14.b1 PHD_FILE: MSMg01no325_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:08 2005
         (689 letters)



>mm_chrX_166030139_166031227
          Length = 1089

 Score = 1299 bits (672), Expect = 0.0
 Identities = 681/684 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcctttcttaccgtttcttttgttgtggagaatcaccatgacaatggcaactct 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcctttcttacagtttcttttgttgtggagaatcaccatgacaatggcaactct 264

                                                                       
Query: 65  tataaaggaagacattttgttggggttgacttaccagtacattatcaacatgtcaggaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tataaaggaagacattttgttggggttgacttaccagtacattatcaacatgtcaggaag 324

                                                                       
Query: 125 tatggcagcacacaggcagacatggtgttagagaagagaataagagttttatatctggat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tatggcagcacacaggcagacatggtgttagagaagagaataagagttttatatctggat 384

                                                                       
Query: 185 tggcaggcagtagggaaagagagaaagagtgagccatttgcctattttgagcttctgaaa 244
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tggcaggcagtagggagagagagaaagagtgagccatttgcctattttgagcttctgaaa 444

                                                                       
Query: 245 ccttagagaccagccttagtgactcactttctccaacaaggacacatctactccaccaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccttagagaccagccttagtgactcactttctccaacaaggacacatctactccaccaat 504

                                                                       
Query: 305 gccacaactcctaatagtgccacttctatgagcctataggggccattttcattcaaacca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gccacaactcctaatagtgccacttctatgagcctataggggccattttcattcaaacca 564

                                                                       
Query: 365 ccacatttcccaggaatgtcttaaaatttatatgtttttttgctgttgatcatctcaaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ccacatttcccaggaatgtcttaaaatttatatgtttttttgctgttgatcatctcaaaa 624

                                                                       
Query: 425 atatgtaacattctggataacaaagataataataaagccaaggattcttatttcaaaagc 484
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atatgtaacattctggatcacaaagataataataaagccaaggattcttatttcaaaagc 684

                                                                       
Query: 485 tttgaggaaaatggagttcctttatgaattcttagtgtcattaataaaataatttaggaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tttgaggaaaatggagttcctttatgaattcttagtgtcattaataaaataatttaggaa 744

                                                                       
Query: 545 catagttggaaggaagttccaagaccattttcttggagcttgaaagaaaatcaacaggac 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 catagttggaaggaagttccaagaccattttcttggagcttgaaagaaaatcaacaggac 804

                                                                       
Query: 605 aggcaaactgtaaatatcagcatctgctagagaggagggagattgggaagagggagagat 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aggcaaactgtaaatatcagcatctgctagagaggagggagattgggaagagggagagat 864

                                   
Query: 665 aaagtaattccttttgactttggg 688
           ||||||||||||||||||||||||
Sbjct: 865 aaagtaattccttttgactttggg 888


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space:   732641
Effective search space used:   732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no325_j14.g1 MSMg01no325_j14.g1 CHROMAT_FILE:
MSMg01no325_j14.g1 PHD_FILE: MSMg01no325_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:08 2005
         (660 letters)



>mm_chrX_166161468_166162527
          Length = 1060

 Score = 1253 bits (648), Expect = 0.0
 Identities = 657/660 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcattgaaatggttaccttttcttgttcattgaattaaattattgcaaaagtgagaaaag 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949 tcattgaaatggtttccttttcttgttcattgaattaaattattgcaaaagtgagaaaag 890

                                                                       
Query: 61  aaaagaaaagaaaagaaaagtgaagaaaaccacccaaaccaactctatacaactattaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889 aaaagaaaagaaaagaaaagtgaagaaaaccacccaaaccaactctatacaactattaca 830

                                                                       
Query: 121 catttcttgtgctctacattctattctgatggtgaggtaacagtaactggaagataagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 catttcttgtgctctacattctattctgatggtgaggtaacagtaactggaagataagaa 770

                                                                       
Query: 181 aacaaataaactgctaatagagttttaaaggtatgggatgttacaacttgtttattaagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 aacaaataaactgctaatagagttttaaaggtatgggatgttacaacttgtttattaagt 710

                                                                       
Query: 241 aatgcctttatttccaattatttatatcatgtagtgatactatttatagagtaaataaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 aatgcctttatttccaattatttatatcatgtagtgatactatttatagagtaaataaat 650

                                                                       
Query: 301 gtatataaatgtagcaatgaaatcatggtgggagagaagaaaggcatatagtctacctgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 gtatataaatgtagcaatgaaatcatggtgggagagaagaaaggcatatagtctacctgc 590

                                                                       
Query: 361 accattggagttagtatacatgggaatgtatggtgctcataattgatgtagcggtaggat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 accattggagttagtatacatgggaatgtatggtgctcataattgatgtagcggtaggat 530

                                                                       
Query: 421 cctgaacatcaccagcaaatctattaactagaaaaaggcaaaagacttttctggaagaca 480
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 529 cctgaacatcaccagcaaatctattaactagaaaaaggcgaaagacttttctggaagaca 470

                                                                       
Query: 481 ggaacacagaaacaaagtcaccatagcatgagcacgagggaacatttttattgtgaaata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ggaacacagaaacaaagtcaccatagcatgagcacgagggaacatttttattgtgaaata 410

                                                                       
Query: 541 gcaaggcataaggtttggaaacacaatcggaaatatgccaactaggtgactatggggtga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 gcaaggcataaggtttggaaacacaatcggaaatatgccaactaggtgactatggggtga 350

                                                                       
Query: 601 ggcaggatggcaaattcaaatggcattttttgatgtgtgtcacaggctggcccagcttga 660
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 349 ggcaggatggcaaattcaaatggcattttttgatgtgtgtcaaaggctggcccagcttga 290


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space:   682500
Effective search space used:   682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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