BAC Information

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BAC

Clone NameMSMg01-327K12
ChromosomeX (Build37)
Map Location 143,952,445 - 143,952,801
singlet/doubletsinglet
Overlap geneLrch2
Upstream geneEG666730, EG245663, Htr2c, Il13ra2, V1rb10
Downstream geneLOC100039462, LOC666789, LOC434863, EG623995, EG624023, LOC666184, LOC100039511, LOC666812, LOC100039519, LOC434864, EG624096, LOC100039545, LOC666837, LOC100039553, LOC100034729
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327K12.T7 (MSMg01no327_k12.b1)MSMg01-327K12.TJ (MSMg01no327_k12.g1)
ACCAG444959AG444960
length751736
length of high quality
(start - end)
363 (42 - 404)346 (72 - 417)
definitionCHROMAT_FILE: MSMg01no327_k12.b1 PHD_FILE: MSMg01no327_k12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:36 2005CHROMAT_FILE: MSMg01no327_k12.g1 PHD_FILE: MSMg01no327_k12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATGAGAATCTCCCAGCAGAATGTTGAAAATGTAAAATAGGTGAAATGGT
GGTAACTTGTGCCCCCACTCAGAAGGCAGACTTTTGCCTGAGGAGCACAA
TTCCTACCCGCTCCAAGCTTGGGTCTGTGGCGTATGAAGAACTGCATTTG
TTGCCTTGTTCGTTTTAATCTTTCAATAATCTCCTCCTCCTCTTCTTCCT
CCTCCTCTTCCTCCTCCTCCTCCTCCTTCTACAGATTTCTTTAATACAAC
ATATTGTGATTATGGTTCTTCACTTAACTCTTTCCAGTCCTTCTCATCTC
TCCACCCACTGCAATCTACATTTTCTTGTTCTCATTAAAAAACAAAGAGG
CATCTAATATAATATTCCCCCCCCCCCACAAAAATTAAAAATCTGTATAG
GGCCAATCATAACACCCAGATACACAAAGAATAACCGAAAAAGCCTACGA
CATATACCTAACTGTAGAGACATATATATTACCACACAGAGAACTTATCT
ACATTTACCACATCACAAACCACAACATATAATCACAGGACTCTCCTTCA
CCAAAACGATTTGACCACCAATATCCTATGTTAAGAATTATGACACTACA
CCCCCTTCCACAAATACTATTTACCTCTATCCTGCGTTGTTGTCCTACCT
GTTAGTCTCAACAGTTTGTACTTTTTCGCGGCTTTTGTTTATCCCTCGCA
N
TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGCACAGCGACACACTATTGGCTTATTCA
AACATTAACAGAAAGATTACATGTACGTGCGGGGTGTCAGAGTTCTGTGA
GTTGTTGACTCAGTTCAGATAGCCCTGTTATGTCTTCACATTCCCTTTAT
CTTATAGTCAAGATGTTCCCAGGAATGTTTTAACTATGGGGCATACCCGG
GTTTGTTTTTCTCTTTTCTCAGCCCCAGGCAGCCTCTAGGCTCACAAACA
ACCAGCAATTTCTGAGTACTTTATATGACTTACAGGTCTTGAAATTTCAT
CTTTCTTTCAGTTGTGAACCACATTTTGGAAGTTGGGAAATTAACCCAAG
TCCTCTGTAAAAGCACCCACCACCCAGTGCTCTTAATCCCTGAACCATCT
CTCCAGTCATTTATATAAACCTTATCAGTATAATTTGTTTAAAAATATTT
AATGTTTGTTTTAAAATAAGAAACTTAAAAAAATAGAATGAGTTATCCTA
TTTGAGCAATGTTGATGACTGAGTTGTTATTTATATTACGTACTATACTA
CTATTCTTTTCACCAATTATAGTTTATGTGGTATACAAATCCTGATATGT
CCTATAATTATCGAACACACTCTTTAAAATTTTTTCATATTATGTACACA
GTGGACCTACATTACTTTCGACGTTTATTAGTCTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_k12.b1 MSMg01no327_k12.b1 CHROMAT_FILE:
MSMg01no327_k12.b1 PHD_FILE: MSMg01no327_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:36 2005
         (363 letters)



>mm_chrX_143952415_143953175
          Length = 761

 Score =  605 bits (313), Expect = e-177
 Identities = 347/359 (96%), Gaps = 2/359 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatgagaatctcccagcagaatgttgaaaatgtaaaataggtgaaatggtggtaa 64
           ||||||||||||| |   |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 387 gaattcatgagaagcagacagcagaatgttgagaatgtaaaataggtgaaatggtggtaa 328

                                                                       
Query: 65  cttgtgcccccactcagaaggcagacttttgcctgaggagcacaattcctacccgctcca 124
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 327 cttgtgcccccactcagaaggcagacgtttgcctgaggagcacaattcctacccgctcca 268

                                                                       
Query: 125 agcttgggtctgtggcgtatgaagaactgcatttgttgccttgttcgttttaatctttca 184
           ||||||||||||||| ||||||||||  |||||||||| |||||| ||||||||||||||
Sbjct: 267 agcttgggtctgtggtgtatgaagaa--gcatttgttggcttgtttgttttaatctttca 210

                                                                       
Query: 185 ataatctcctcctcctcttcttcctcctcctcttcctcctcctcctcctccttctacaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 ataatctcctcctcctcttcttcctcctcctcttcctcctcctcctcctccttctacaga 150

                                                                       
Query: 245 tttctttaatacaacatattgtgattatggttcttcacttaactctttccagtccttctc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 tttctttaatacaacatattgtgattatggttcttcacttaactctttccagtccttctc 90

                                                                      
Query: 305 atctctccacccactgcaatctacattttcttgttctcattaaaaaacaaagaggcatc 363
           ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 89  atctctccacccactgcaatctacattttcttgctctcattaaaaaacaaagaggcatc 31


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 761
Length adjustment: 9
Effective length of query: 354
Effective length of database: 752
Effective search space:   266208
Effective search space used:   266208
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)