BAC Information

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BAC

Clone NameMSMg01-328M16
ChromosomeX (Build37)
Map Location 121,308,356 - 121,308,694
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039751, LOC100039763, LOC665281, EG625591, LOC665325, EG382265, LOC665364, EG546368, LOC100038940, LOC100038941, EG625699, LOC100038942
Downstream geneLOC100039828, EG434843, EG665463, EG665522, LOC100038969, LOC100038978, EG665579
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328M16.T7 (MSMg01no328_m16.b1)MSMg01-328M16.TJ (MSMg01no328_m16.g1)
ACCAG445797AG445798
length734732
length of high quality
(start - end)
585 (41 - 625)343 (70 - 412)
definitionCHROMAT_FILE: MSMg01no328_m16.b1 PHD_FILE: MSMg01no328_m16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:02 2005CHROMAT_FILE: MSMg01no328_m16.g1 PHD_FILE: MSMg01no328_m16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:02 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACTCATTTGCCGATGGTGTGTTCATCATTGAATATACAGACTCCTGAAAA
GAGTCATACAAAATATGCTTCATTATATACTAGACAATTAGTGTCATTTT
GTTTGGCAATACAACATGTATGATTATGCCTCAGAATCATGAGCAACTGG
GCCATATGGGAAATATAATTAGTATATTTCTGCTGACTGAAGATCAGATG
TGTTGAGTGTTATCATGTGTGCTGTTCATGAGAGGAAGCTGCATAGATGG
TGAGTATAGATCAGAGAGGAACATCCAAGGAGGACACTATGTAAGGAACC
CTAGGAAGAGCACCATCACTGCTTTTAGCTAGTACACATATTTTTAGAAT
CCCCACTTTCCACCCCCGCAAAAGAAAACTGTATTACTCTAATTTACTAA
GTATGGTCATTTGATACATCAGTGATCATCATCAAGGTGAACAGGTGTTG
ACAGAAGTTTGGGGACTCAGAAGAAGCCTGTTCTGGGAAAACCCATTGCC
TTCAAAGAACGGAGATTTCTGACCAGCAACACTGGATAAACAGTCTACAT
TGGCAGCAGTAGCCCCATTGTGTCCAAATTAGTGGTTTTCAATCCACTAA
TCCATCCATAAGCAGCCTCCAAACACTGACACCATTGCATACCCTGGCAA
GATTTTGCTGGAAGGACCCCGATTTACCTGTCTC
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTAATTTAGACAAAGTGTACCTGATGACTCC
TTGAGCCACTGAGAGTGATTTAAGCTCCACTTCAAGAATGGGGGGACAGT
GTGAGTCTTCTTGGTGCTGAAGGGATAATTCTGAGGTTTGTGTGTCAGAA
ACAGGACTTGGAGGACCCAGTGACAGAGTGATAATGTTGATGTATCCACA
AACAATCTATAAAGGATGCCATCCTTTAGAGGCAGAAAGGTTCACACCAT
GTTGGGGAAAGTAGAAATGCCAAAGACTATTGTATCTGTACAAGATCAAG
GGTCGATATGGAGAGGAGAGAAGGCCTGAATATTTCATGATTGAGACGTC
CTGGGAACCTACAACACGCAAATCATGCAGGCCATGCAACAGCTTAATCA
ATCTCCAGTGTGCTAGGAGACTTTTCCCAGCTAGTTCTCCTGATAAATCT
GCTGCCTACTTCTAAAAATGGCAAGGCTTTCTCATTTTTGCTGGTCAGCT
TAATGTCTATGTCCTGGGTTCATTAACGTGCTGGCTACTCTTAAGCTCTG
AGACTTCAGGAACCCGGGTCCTGATCCTTGTACAGGGGTAATTACGTCCG
AGGATCAGAATAAGAATCACTTGGCGCACCTTAGATCAAGGGAGTGGAAT
TTTCTTGTACTATATCAGATCTAGTATGTAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_m16.g1 MSMg01no328_m16.g1 CHROMAT_FILE:
MSMg01no328_m16.g1 PHD_FILE: MSMg01no328_m16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:02 2005
         (343 letters)



>mm_chrX_121308153_121308895
          Length = 743

 Score =  501 bits (259), Expect = e-146
 Identities = 319/339 (94%)
 Strand = Plus / Plus

                                                                       
Query: 4   atttagacaaagtgtacctgatgactccttgagccactgagagtgatttaagctccactt 63
           |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 204 atttagacaaagtgtacctgatgactccttgagccattgagagagatttaagctccactt 263

                                                                       
Query: 64  caagaatggggggacagtgtgagtcttcttggtgctgaagggataattctgaggtttgtg 123
           |||| |||||| || |||||||||||||||  ||||||||| ||||||||||||||| ||
Sbjct: 264 caagcatggggagaaagtgtgagtcttcttattgctgaaggaataattctgaggtttctg 323

                                                                       
Query: 124 tgtcagaaacaggacttggaggacccagtgacagagtgataatgttgatgtatccacaaa 183
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 324 tgtcagaaacaggacttggaggacccattgacagagtgataatgttgatgtatccacaaa 383

                                                                       
Query: 184 caatctataaaggatgccatcctttagaggcagaaaggttcacaccatgttggggaaagt 243
           |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 384 caatctataaagaatgccatcctttagaggcagaaagattcacaccatgttggggaaagt 443

                                                                       
Query: 244 agaaatgccaaagactattgtatctgtacaagatcaagggtcgatatggagaggagagaa 303
           |||||||||||||||| |||||||||||||||||||||||| ||| |||||||||| |||
Sbjct: 444 agaaatgccaaagactcttgtatctgtacaagatcaagggttgatttggagaggagtgaa 503

                                                  
Query: 304 ggcctgaatatttcatgattgagacgtcctgggaaccta 342
           |||||||||||||||| || ||| | |||||||||||||
Sbjct: 504 ggcctgaatatttcattatcgaggcttcctgggaaccta 542


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)