BAC Information

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BAC

Clone NameMSMg01-329F15
ChromosomeX (Build37)
Map Location 35,887,262 - 35,887,624
singlet/doubletsinglet
Overlap geneCul4b
Upstream geneRhox4c, EG434760, LOC546295, Rhox4d, LOC100040016, Rhox4e, LOC100040043, LOC621852, Rhox4h, LOC546294, EG621903, EG434766, Rhox4g, EG434758, LOC622301, EG622311, Rhox6, Rhox7, Rhox8, LOC436198, Rhox9, LOC100039620, 4930525M21Rik, 4930430D24Rik, Rhox10, Rhox11, Rhox12, 1700123J19Rik, Zbtb33, 6430550H21Rik, EG665331, Atp1b4, Gm40, EG227112, Lamp2, LOC100040971, EG665352, LOC670495
Downstream geneMcts1, C1galt1c1, EG665369, 6030498E09Rik, LOC547171, LOC670539, LOC100039700, 1700085A12Rik, LOC100039715
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329F15.T7 (MSMg01no329_f15.b1)MSMg01-329F15.TJ (MSMg01no329_f15.g1)
ACCAG446209AG446210
length787749
length of high quality
(start - end)
371 (47 - 417)503 (76 - 578)
definitionCHROMAT_FILE: MSMg01no329_f15.b1 PHD_FILE: MSMg01no329_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:46 2005CHROMAT_FILE: MSMg01no329_f15.g1 PHD_FILE: MSMg01no329_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATGTCATAGCCGAAATTTTAACTACAAGATTCAGAGGTCCAAAT
CACTTAATTAAATAAATTAAAATTCATAGTAAACCAGAAACATAAAGAGG
TGAATTAATATGATACTTTCCCAAATTTCCTGTAATTGTGTGAATGTGTG
GTATTGGGGAGTAGAGCCTAGGCCCCTTTCATATGCTAGGCAAGTACTGT
ACCACCTGGTAAAAGCCTTAACTGCCCCAACCATTTTGTTTGATTTTTTG
CCAACTTTCATGAACTCACTATTGCCATTCCTCAAGCTACCCAAGTAGCA
AGGATTATGTAGGCTTATGCCAGTATGTCCAGTATTTTATATAGGTCATA
TAGTAATTTCTTTTACACCCCCCAATTCTTGTGTTAATTGTTTATTTACT
TAATTTCAGGTTTGTTTGTGACAGAGTCTTATTGTGTACCCCAAGTAGGT
CTTCCTCTGAATCCTCCTGGCTCTGGCCTCTTACTTGCTGTGACCTCACA
CATTTGCTACCCCGCCCCAGTTACATCTAATTTAAGTTAATTTACCCCCC
TATACATTATCCTGTCCTGTCATTTTCCCTACGTCCCACTATTATGGTTC
TCTTCCTACCCGCATATCCGCCCCGGTTTCTTGCCCCCTTCCCATTCTCT
TTTCTTTTTTTTCCCCCTTTTCCCCTCTTTCCTTTTCGCCTCTACTGCCC
ACCCTCCTTTTCTCCGCCCCCCTCCAGTTTCTCCTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAG
AGAAACACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAA
TCAGTCTGGCGGTTCCTCATAAAATTGGACATAGTACTACCGGAGGATCC
AGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGA
AGGACACATGCTCCACCACGCTCATAGCAGCCTTATTTATAATAGCCAGA
AGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAAT
GTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAAT
TCATGAAATTCCTAGCCAAATGGATGGACCTGGATGGCATCATCCTGAGT
GAGGTAACACTTTCACAAAGATACTCACACAATATGCACTCACTGATAAG
CGGATATTACCCTCATATCCTAGTATACCCCCGATATAAGATATAATCTG
CTATCCCCTTGATACTCACGAATAATGACTACTGAGGTGTGGTACTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_f15.b1 MSMg01no329_f15.b1 CHROMAT_FILE:
MSMg01no329_f15.b1 PHD_FILE: MSMg01no329_f15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:46 2005
         (371 letters)



>mm_chrX_35886853_35887624
          Length = 772

 Score =  650 bits (336), Expect = 0.0
 Identities = 357/364 (98%), Gaps = 2/364 (0%)
 Strand = Plus / Minus

                                                                       
Query: 9   tcatgtcatagccgaaattttaactacaagattcagaggtccaaatcacttaattaaata 68
           |||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 772 tcatgtcatag-tgaaattttaactacaagattcagaggtccaaatcacttaactaaata 714

                                                                       
Query: 69  aattaaaattcatagtaaaccagaaacataaagaggtgaattaatatgatactttcccaa 128
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 713 aattaaaattcatagtaaaccagaaacataaagaggtgaattaatatgatacgttcccaa 654

                                                                       
Query: 129 atttcctgtaattgtgtgaatgtgtggtattggggagtagagcctaggcccctttcatat 188
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 653 atttcctgtaattgtgtgaatgtgtggtattggggagtagaacctaggcccctttcatat 594

                                                                       
Query: 189 gctaggcaagtactgtaccacctggtaaaagccttaactgccccaaccattttgtttga- 247
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| 
Sbjct: 593 gctaggcaagtactgtaccacctggtaaaagccttaactgccccagccattttgtttgac 534

                                                                       
Query: 248 ttttttgccaactttcatgaactcactattgccattcctcaagctacccaagtagcaagg 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ttttttgccaactttcatgaactcactattgccattcctcaagctacccaagtagcaagg 474

                                                                       
Query: 308 attatgtaggcttatgccagtatgtccagtattttatataggtcatatagtaatttcttt 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 attatgtaggcttatgccagtatgtccagtattttatataggtcatatagtaatttcttt 414

               
Query: 368 taca 371
           ||||
Sbjct: 413 taca 410


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 772
Length adjustment: 9
Effective length of query: 362
Effective length of database: 763
Effective search space:   276206
Effective search space used:   276206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)