Query= MSMg01no329_l13.b1 MSMg01no329_l13.b1 CHROMAT_FILE:
MSMg01no329_l13.b1 PHD_FILE: MSMg01no329_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:17 2005
(597 letters)
>mm_chrX_130056433_130057428
Length = 996
Score = 1122 bits (580), Expect = 0.0
Identities = 590/594 (99%), Gaps = 3/594 (0%)
Strand = Plus / Plus
Query: 5 gaattcctaaccttactgaa-atatacttgttccagtcctaggtgaggccctcaaatgca 63
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctaaccttactgagcatatacttgttccagtcctaggtgaggccctcaaatgca 264
Query: 64 ttatccctttcaagcctcacaaactagactactttctatgttagataatagatttgatgt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttatccctttcaagcctcacaaactagactactttctatgttagataatagatttgatgt 324
Query: 124 tttcaggaatgaattcctgactgagaaacgagacacatagcttatcagagactgatttca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttcaggaatgaattcctgactgagaaacgagacacatagcttatcagagactgatttca 384
Query: 184 acagggaaaataatttcacattgttcctgtcccctttattggctagtagaaatgtaccat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acagggaaaataatttcacattgttcctgtcccctttattggctagtagaaatgtaccat 444
Query: 244 tcctcaacctctttttgagatatccttgacttggtgacattttttttttcaaataattgt 303
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 445 tcctcaacctctttttgagatatccttgacttggtgacatttttttt--caaataattgt 502
Query: 304 cagtgtttgcatgtgggagccagaatcttcctccaggggctcagcagcatgaatcacctt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cagtgtttgcatgtgggagccagaatcttcctccaggggctcagcagcatgaatcacctt 562
Query: 364 gagattcttttccctggaacctttacccttggctctttctctccctcctttgttttattc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gagattcttttccctggaacctttacccttggctctttctctccctcctttgttttattc 622
Query: 424 atcatattcaaacctcagaggacatgtgaggtgggactgtataacaacagtgctttttag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 atcatattcaaacctcagaggacatgtgaggtgggactgtataacaacagtgctttttag 682
Query: 484 catatgtagggccagagagggaaaaatgcaaattgtgagtaatgaaattaaccctggggc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 catatgtagggccagagagggaaaaatgcaaattgtgagtaatgaaattaaccctggggc 742
Query: 544 ttcatttgaatggccaacaactcataatgcaggcatgttgaaccatgtatctgt 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ttcatttgaatggccaacaactcataatgcaggcatgttgaaccatgtatctgt 796
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 996
Length adjustment: 10
Effective length of query: 587
Effective length of database: 986
Effective search space: 578782
Effective search space used: 578782
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no329_l13.g1 MSMg01no329_l13.g1 CHROMAT_FILE:
MSMg01no329_l13.g1 PHD_FILE: MSMg01no329_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:17 2005
(466 letters)
>mm_chrX_130208127_130208992
Length = 866
Score = 806 bits (417), Expect = 0.0
Identities = 452/471 (95%), Gaps = 12/471 (2%)
Strand = Plus / Minus
Query: 8 agttcttaggagggactctatggtggtgaaaatgtggttacagcaaagcaaatgtcctgg 67
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 agttcttagaagggactctatggtggtgaaaatgtggttacagcaaagcaaatgtcctgg 807
Query: 68 acttggtgggtagctgtgtcatcatggctccagggagcctgatgaagaagagtcccaaat 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 acttggtgggtagctgtgtcatcatggctccagggagcctgatgaagaagagtcccaaat 747
Query: 128 tttagcccagcctggcccagagtgtgaattaaataccatcctaagcaactgaactgaatt 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 tttagcccagcctggcccagagtgtgaattaaataccatcctaagcaactgaactgaatt 687
Query: 188 ctcatctc------------aaaactacgtttgttttactgagtttgtagtccacgggaa 235
|||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 686 ctcatctcaaaatacaaagtaaaactacgtatgttttactgagtttgtagtccacgggaa 627
Query: 236 tacgggagaccatctcttcattgcaccgtacctcccaccccaaagcaacttgcccatatt 295
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||
Sbjct: 626 tacgggagaccatctcttcattgcacagtacctcccaccccaaagcaatttgcccatgtt 567
Query: 296 catagatttgtggccaaagtagacgcccaggtagctcttcagcatccaagtgcattctcc 355
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 catagatttgtggccatagtagacgcccaggtagctcttcagcatccaagtgcattctcc 507
Query: 356 tttagaatagaaaaacacccatcagtcctctctgggaggatctacagataaacctttgtt 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tttagaatagaaaaacacccatcagtcctctctgggaggatctacagataaacctttgtt 447
Query: 416 ggtaggggcattcctgaaaagctgatagaaggtgagtgtttgttttgcaaa 466
|| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gggaggggcattcctgaaaagctgatagaaggtgagtgtttgttttgcaaa 396
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space: 390336
Effective search space used: 390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
