BAC Information

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BAC

Clone NameMSMg01-330K24
ChromosomeX (Build37)
Map Location 48,765,353 - 48,939,819
singlet/doubletdoublet
Overlap geneHs6st2
Upstream geneOlfr1324, LOC100041788, 6720401G13Rik, 2610018G03Rik, LOC100040422, Rap2c, LOC385355, Mbnl3, LOC665866, LOC385356
Downstream geneUsp26, LOC100040479, LOC665888, 1700080O16Rik, LOC100040495, Gpc4, Gpc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330K24.T7 (MSMg01no330_k24.b1)MSMg01-330K24.TJ (MSMg01no330_k24.g1)
ACCAG447176AG447177
length725730
length of high quality
(start - end)
340 (386 - 725)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no330_k24.b1 PHD_FILE: MSMg01no330_k24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:27 2005CHROMAT_FILE: MSMg01no330_k24.g1 PHD_FILE: MSMg01no330_k24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,939,480 - 48,939,819)(48,765,353 - 48,765,639)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGGATGTTTAATGGCTATAGTAATTATGAAGAAATTATTTACATCA
AAAAGTCATTTGCCAGTGTAAGCCCCGTTGAAGGTAACAGTACCTTGTCA
ACTAATGCCAACATGGACAACTACCATTAGTGACTTCTTGGAACACTACT
GAGCCGTAAAGCACATGTTGTGTAAGCATGTGATGTGAGCACATACAGTT
GACTCTCCTTATTCATGGGTTCCACTTTTGTAAATTCTACTAAATGCAGA
TTTAAAATATTTGAAGTGAATTGGGCTTGTACTGAACCCGAACATACTTT
TTTCTTGTAATTATTCTTTATACACCCCCACCCCTAACCATTTTCATAGT
ACCTGCCTTGCATTAGGTATTATAAGTCATCTAAAGAGGATTTAATGTAT
ATGACAGCATATACAGAGATTTTATATAAGGAATTATATATAAGGAAGAT
GAACATCCACAGATGTTAGAATCCAGAGGGGTTGTCTGCGAACCAATCAT
CTATGAATACTGAGCAAAACTGCAACTGTAAGTGACAAGCAAACACATGC
TTTCAGAAGTGTGTGTCCTTTCTCCTTAGAGAGACAGAATGGCTTCCCAA
CATTGTTGTCTTCTAAATGCATTGCTATTAAAATCTGTAGCCATTTATCC
ATACACTTGTGATGGAATTAAAGAG
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGGTTATACTTGTTTTTGCAAC
AAGAGAAAGCAAAAGAATAAGCAGCCCCTTCCAGGGTGTACCGCAGACAC
TCCACTGTGCTGATTACAAATACATTGCAGACATGTCTTACTTTAATCCC
TATAATAATAAGACTCTACTTTGTATTGGGGCAGAGTCTGCAGAAAACAA
AAGAAGTACACCTTCATCATGTGTTTCAGACTCTCTATACCACCTCCCTT
ACTCTTGTCTACCTTCAACCATACCAGCATGTACCACGTATACCGTCTGG
GTGCACAGTAAAAATTTGCTGTTTGCACCCACTACCCCCTGTAATAACAC
ATATAGTGCCTGATTAACTGTTAGATGGATATAAAAGAAAGATTGGGAGA
CAGTCTCAAGAGTGTACCAGGAGAGACATGATAGAGGAAGGCATAGCCAC
CATTTTAAAATGTGAGTGTAAGTCATTCCAGTGACTCCACAAGACTCTCC
AGTAGTAGACAATAAGTAGACAATCATGTAGTAAACATTTCAAAGACCCA
AGTGGAGGGTCTTTGAAATGATACATGCATACCATTATACAATGTATATG
TATATCAAATATTGACTCATAGCATCCAAAGTATACAAATATACCATCTA
TATAATTTTATGTGTCAATTAATTTGATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_k24.b1 MSMg01no330_k24.b1 CHROMAT_FILE:
MSMg01no330_k24.b1 PHD_FILE: MSMg01no330_k24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:27 2005
         (340 letters)



>mm_chrX_48939101_48939840
          Length = 740

 Score =  603 bits (312), Expect = e-177
 Identities = 333/340 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaccattttcatagtacctgccttgcattaggtattataagtcatctaaagaggatttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 aaccattttcatagtacctgccttgcattaggtattataagtcatctaaagaggatttaa 660

                                                                       
Query: 61  tgtatatgacagcatatacagagattttatataaggaattatatataaggaagatgaaca 120
           ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 659 tgtatatgacagcatatactgagattatatataaggaattatatataaggaagatgaaca 600

                                                                       
Query: 121 tccacagatgttagaatccagaggggttgtctgcgaaccaatcatctatgaatactgagc 180
           |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 599 tccacagatgttagaatccagaggtgttgtctgggaaccaatcatctatgaatactgagc 540

                                                                       
Query: 181 aaaactgcaactgtaagtgacaagcaaacacatgctttcagaagtgtgtgtcctttctcc 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 539 aaaactgcaactgtaagtgacaagcaaacacatgctttcataagtgtgtgtcctttctcc 480

                                                                       
Query: 241 ttagagagacagaatggcttcccaacattgttgtcttctaaatgcattgctattaaaatc 300
           ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 479 ttagagagacagaatggcttcccaacatcattgtcttctaaatgcattgctattaaaatc 420

                                                   
Query: 301 tgtagccatttatccatacacttgtgatggaattaaagag 340
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tgtagccatttatccatacacttgtgatggaattaaagag 380


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no330_k24.g1 MSMg01no330_k24.g1 CHROMAT_FILE:
MSMg01no330_k24.g1 PHD_FILE: MSMg01no330_k24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:27 2005
         (287 letters)



>mm_chrX_48765153_48765839
          Length = 687

 Score =  540 bits (279), Expect = e-158
 Identities = 285/287 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagggttatacttgtttttgcaacaagagaaagcaaaagaataagcagccccttccaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 cagggttatacttgtttttgcaacaagagaaagcaaaagaataagcagcccattccaggg 260

                                                                       
Query: 61  tgtaccgcagacactccactgtgctgattacaaatacattgcagacatgtcttactttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtaccgcagacactccactgtgctgattacaaatacattgcagacatgtcttactttaa 320

                                                                       
Query: 121 tccctataataataagactctactttgtattggggcagagtctgcagaaaacaaaagaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 tccctataataataagactctactttgtattggggcagagtctgcagaaaaaaaaagaag 380

                                                                       
Query: 181 tacaccttcatcatgtgtttcagactctctataccacctcccttactcttgtctaccttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacaccttcatcatgtgtttcagactctctataccacctcccttactcttgtctaccttc 440

                                                          
Query: 241 aaccataccagcatgtaccacgtataccgtctgggtgcacagtaaaa 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaccataccagcatgtaccacgtataccgtctgggtgcacagtaaaa 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)