NNTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCTAACTTCCCGGAATTCTTTCTTATTTCAACCCTTACCAA
GTATCATTCAGCAGAAAGTTTTTCAGTTTTCATGAGTATGTGGACTTTCT
GTTGTTTTGGTTGTTATTGACATCTAGCCTTATTCTGATGTTATCTGATA
GAATGCATGTGAGTATTCCCATTTTCTTGTATCTGTTGATGCTTTTGTTT
TATGACCAATTATATTATCAGTTTTGAGGAATGTTCCATGAGGAACTCAG
AAGAATATATATTCTCTTGTTTTGGCATGAAATGTTCTATTGATATCTAT
TAAATCCATTTGGGTCAAGACTTCTGTTAGTTTTACTGTGTCTCTGTTAT
TTTCTTTTTCTTTTTCTTTCCCCCTTTTTTTTTTTTTTAGGGATGACCTG
TTTCTGCACCTTAGTGGTCTCGGCTAGAAGACTTGAAGACAGGCCAGCCC
ACAGATATAGGCATTTCTAATTTTATGTACTTGCAACTTGATCATACAGC
ATGCAAGAATGTGTTAGAGCTGTGGGGAGCGGGTGTGGCGGCAGTCCCAA
AGGCGCCAGGGACTGTAGCTAAGTCATATGACTTGCACCTGACTTCCTCA
TATAAGACACAAACATCTTGAATGCTGCGCAGGTGTACCAGGATTCAGGT
GAATCCAATTTGGTGGAGATATGCCCN

CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTTATTTCTACCCTGACCAAG
TATCATTCAGCAGAAAGTTTTTTTAGTTTTCAGGAGCATGTGGACTTTCT
GTTGTTTTGGTTGTTATTGACATCTAGCCTTATTCTGATGTTATCTGATA
GAATGCATGTGAGTATTCCCATTTTCTTGTATCTGTTGATGCTTGTTTTA
TAACCAATTATATTATCAGTTTTGGAGAATGTTCCATGAGGAGCTGAGAA
GAATGTATATTCATTTGTTTTGGGGTGAAATGTTCTATAGATATCTTTTA
AATCCATTTGGTTCATAACTTCTGTTCATTTCACCGTGTCTCTGTTATTT
TCTATTTCAATGACCTGTCCACCGCTGAGAGTGGAGTGTTGAAGTCCCCC
ACTATAATTATGAGAAGTTCAATGTGTGTTTTGAGCTTTAGTAAAATTTC
TTTAATGGATGTGTGTCTTAGTCAGGGTTTCTATTCCTGCACAAACATCA
TGACCAAGAAGCAAGTTAGGGAGGAAAAGGTTTATTCAGCTTACACTTCC
ATACTGCTGTTCATCATCGAGGAAGTCAGGACTGGAATTCAAGCAGGTCA
TAAAGCAGGAGCTGATGCAGAGGCAATGGAGGGATGTTGCTTACTGGCTT
GCTTCCCCTGGCTTGGTCAGCCTGN

Query= MSMg01no331_j22.b1 MSMg01no331_j22.b1 CHROMAT_FILE:
MSMg01no331_j22.b1 PHD_FILE: MSMg01no331_j22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:32 2005
         (676 letters)



>mm_chrX_4923806_4924887
          Length = 1082

 Score =  832 bits (430), Expect = 0.0
 Identities = 500/542 (92%), Gaps = 32/542 (5%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctaacttcccggaattctttcttatttcaacccttaccaagtatcattcagca 64
           |||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 193 gaattctctaacttcttggaattctttcttatttcaaccctgaccaagtatcattcagca 252

                                                                       
Query: 65  gaaagtttttcagttttcatgagtatgtggactttctgttgttttggttgttattgacat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gaaagtttttcagttttcatgagtatgtggactttctgttgttttggttgttattgacat 312

                                                                       
Query: 125 ctagccttattctgatgttatctgatagaatgcatgtgagtattcccattttcttgtatc 184
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ctagccttatcctgatgttatctgatagaatgcatgtgagtattcccattttcttgtatc 372

                                                                       
Query: 185 tgttgatgcttttgttttatgaccaattatattatcagttttgaggaatgttccatgagg 244
           |||||||||||  ||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 373 tgttgatgctt--gttttatgatcaattatattatcagttttggggaatgttccatgagg 430

                                                                       
Query: 245 aactcagaagaatatatattctcttgttttggcatgaaatgttctattgatatctattaa 304
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 aactcagaagaatgtatattctcttgttttggcatgaaatgttctattgatatctattaa 490

                                                                       
Query: 305 atccatttgggtcaagacttctgttagttttactgtgtctctgttattttctttttcttt 364
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 491 atccatttgggtcaagacttctgttagtttcactgtgtctctgttattttctttttcttt 550

                                                                       
Query: 365 ttctttccccctttttttttttttt-------------------agggatgacctgtttc 405
           || |||     ||||||||||||||                   ||||||||||||||||
Sbjct: 551 tttttt-----tttttttttttttttttttttttttttttttttagggatgacctgtttc 605

                                                                       
Query: 406 tgcaccttag------tggtctcggctagaagacttgaagacaggccagcccacagatat 459
           || |||||||      ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 tgtaccttagcactggtggtctcggctagaagacttgaagacaggccagcccacagatat 665

                                                                       
Query: 460 aggcatttctaattttatgtacttgcaacttgatcatacagcatgcaagaatgtgttaga 519
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 aggcatttctaattttatgtacttgcaacttgatcatacagcatgcaagaatgtgttaga 725

             
Query: 520 gc 521
           ||
Sbjct: 726 gc 727


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1082
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1072
Effective search space:   713952
Effective search space used:   713952
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)