BAC Information

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BAC

Clone NameMSMg01-332G10
ChromosomeX (Build37)
Map Location 141,355,005 - 141,517,516
singlet/doubletdoublet
Overlap geneZcchc16
Upstream geneDcx, LOC666628, LOC666633, LOC100039378, LOC100039243, Alg13, LOC100039407, Trpc5, LOC100039436, LOC666655
Downstream geneLOC623591, Lhfpl1, Amot, EG434860, LOC100039313, LOC623697, LOC623731
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332G10.T7 (MSMg01no332_g10.b1)MSMg01-332G10.TJ (MSMg01no332_g10.g1)
ACCAG448444AG448445
length1,3241,332
length of high quality
(start - end)		441 (159 - 599)637 (130 - 766)
definitionCHROMAT_FILE: MSMg01no332_g10.b1 PHD_FILE: MSMg01no332_g10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:48 2005CHROMAT_FILE: MSMg01no332_g10.g1 PHD_FILE: MSMg01no332_g10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,355,005 - 141,355,445)(141,517,138 - 141,517,516)
sequence
GGCCCCCCNNNNNNNNCCGGCTCTCTNNNNNCCATTGGGCGCAAGACTCC
TAAGGGAGAGGATCCGCGGAATTCTTTCCTAGGTTGGAACTCTACACTAT
CCCCCAANCCAAGNNGGANGAGCNNAGNNNACACTAAAACTCCCACAGAN
GANTTTGNCAAAACCTGAGGGGNAAAGCAGGGGGNTCGGGAGCTTTTTCC
TCCTACAGGATTACCACATCCAGCTGTGAGATGAGGATATGTGCCCAGTC
TTATTTTATCTTGTTAGGTCATAGTCAGTGAATACCCCTGAGAGTATCTC
TCATTATTTCTGTTTACTTTTTGAAGGGAAACAGGATGAGTTGGTCCAGG
GGAAAGAGGACACACAGGAGGAGGATCTGGAAGGAGTATAAGGAGGGGAA
ACTGTGGTCAGGATAAATCTAGGAAAAAACAAAACATAACCTAAAAGCCA
TATAGCTTCTCTATGAATGCTGGCCAGTTACCTTCTCCTGTGTACCATCT
CAATGTAGTCTTCTTGTTTTAATGTTCTAGCCCAGCTGAGTGACTCTGAT
GTTGAGTGACTCCAGACATGATCTGTAAAAATAGGCATAAAAGTTGTGTG
TCATGCGTAGGATTTAATAAAAAGTCTGTCCTTCTTTTCTGCCCCTCTGA
GGTGCAAAGGAGAAAAGAAGCATGGGGCCCTATAATTAAGGAGTATGTTA
AGTCCCCTAGTTGGTACCTGTCAAACGACTAGCCTGTTTGAGCTGTTTAC
CCTATGAGTTGACTTTGGCACCTTCTCAGAGAGAGAAGTCAAAGAAGTGC
CTGTCTAGGAAGAGATGTGTCTATTGCAATCTGTTTGCACCATTTCATTG
AGCTCATTTCCATTCCTTCTTTAGCAAATCATTGGTGTGACTTTCCCACA
CAAATAGAAAGAAGCAGCTTCAATTAAAACTATATAGGGATGTTCAGTAA
GAAATTCCCACAGAAGTCCATCCAGGAACACCCTAAAAAACATATCCCTC
TTTATGGCCTGGGCCCCGAATTTACTTAAACCTTATCCTCCCCAAACCCG
AAAGGCCTTTTGGGTGGTTTCCCGACCTTGGGAAAACTTACGGAAAAGTC
TTAAGTCCTTTTTTCGAGGGCCGTNCCTTCCCTTCCTTCCTTCCTTTCTT
CCTTCCTTTCTTTCTTTCCTTCCTTCCTTCTTTCTTACCTCCCTTCCNTT
CAAAAAAAACCACCTGGGTGGTTTTGTTTTTATAAAATTTTTTTTATTTT
TGGGGGGGAGAGAGCAAATTCTCTTTCTTAACAACCCTCTTGTGGGTTTT
TAGAGGAAAAAAAAAAGGGGGCTC

NCCTTCATTTTNNNAACTGCATGGATGCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTAAGATCCCCATCAGGGAA
AGGCAAATTAAAGCTGCCTTTTTGTTCCATCCCATATCACTTGGAATAGT
GATTATCAAAAAAAAAATGACAACAAATGCTAGCAATGCTGTGAGGAAAT
CTTATATATTTCTGCCGAGGCTACAAATTGCTGTAGCCAGTCTAGAAACC
AGACTAGAGATTTCTCAGAAAACAACCATATTATGCAGCTATAACTCTCT
TTTTTTGTTTACATATGTGAAGGACTCTAAGATAACAAGCCTCAGAAATA
TGTCCACGTTCAATTTTATTGCTGCTGTTCAATTCACAGTAGGTAGAAAT
TTAGAGCATACTTTTTGTCCATCAACAGAAAAATAGATAAAGAAAATGCT
ATACAAATAAAAGATTGAATTATATTCAGCTGTAAAGAAAACAATAAAAT
CCTAATATTTGCAGAAAATGAAATCAACTGGAAATCATTATGTTAAAATA
AGCCTGGTTCAAATGAATATTGCATGCTTTTTCTCGTGCAGAATATACGT
TCAAATTTGTATAGATGTTTATAAACATATACATGAAGTGAAACTGGGTC
TTGGAAATTACAAAGGGGAGCATAACAGAAAAGGAAAACATTCCAAGTGA
CCAACAGGGGAGGGGGTGTACAAAATAGTTGCCAGTAGAGTTGGCATGAC
AGGAAATCAAAAAGTGAAGATTATTTTTCAGAAAGTACATGACCAGTATG
AAAAGCGAGGATGAATAGAGAAATGAATTAGAACAAACTAAAATGACATG
TGTATATATAAAATGTCATAAGAAAAATCATAATTTAAATGCCCAATTAC
AGCTAATAAAGTGAAATAATCTGGCAAGATAAAAAATTTCAAAAGAAAAA
AAGGAAGAATCTGACACTTTTTCATAACAGCTAATTCTCACAGGGTCCCG
AAAAAACAAACTAATTCCTTTCTTTGAACAGTGTCCAATGACTTAATGAA
TTCATACGGGCCCTTGCCCTCTAAAGGGTTTACAAACTATGGTAACTGCT
CCATTTGGAAACTAAACTCCTAGGAAGTTACTTCTCTCAGAACAAACTTT
ATCCCTAAAAATTTGTTAAAAAGGTCCCAAAAAAAAGAGGCCCTAATAAT
CTTAATCCTCCCGGGAAAATTTAAAACATTTGTCCAACACCTCCTAAGGT
AAAGAGAAAACTCCACGGGCGTAAACCCCTTTCCATCTTTCTCTAAATAT
TTAAAATGTTCTAGAAACATTACACACATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_g10.b1 MSMg01no332_g10.b1 CHROMAT_FILE:
MSMg01no332_g10.b1 PHD_FILE: MSMg01no332_g10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:48 2005
         (441 letters)



>mm_chrX_141354805_141355645
          Length = 841

 Score =  810 bits (419), Expect = 0.0
 Identities = 435/441 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaaacctgaggggnaaagcagggggntcgggagctttttcctcctacaggattaccaca 60
           |||||||||||| | ||||||| | | |||||||||||||||||||||||||||||||||
Sbjct: 201 caaaacctgaggtgtaaagcagtgtgttcgggagctttttcctcctacaggattaccaca 260

                                                                       
Query: 61  tccagctgtgagatgaggatatgtgcccagtcttattttatcttgttaggtcatagtcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccagctgtgagatgaggatatgtgcccagtcttattttatcttgttaggtcatagtcag 320

                                                                       
Query: 121 tgaatacccctgagagtatctctcattatttctgtttactttttgaagggaaacaggatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaatacccctgagagtatctctcattatttctgtttactttttgaagggaaacaggatg 380

                                                                       
Query: 181 agttggtccaggggaaagaggacacacaggaggaggatctggaaggagtataaggagggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agttggtccaggggaaagaggacacacaggaggaggatctggaaggagtataaggagggg 440

                                                                       
Query: 241 aaactgtggtcaggataaatctaggaaaaaacaaaacataacctaaaagccatatagctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaactgtggtcaggataaatctaggaaaaaacaaaacataacctaaaagccatatagctt 500

                                                                       
Query: 301 ctctatgaatgctggccagttaccttctcctgtgtaccatctcaatgtagtcttcttgtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctctatgaatgctggccagttaccttctcctgtgtaccatctcaatgtagtcttcttgtt 560

                                                                       
Query: 361 ttaatgttctagcccagctgagtgactctgatgttgagtgactccagacatgatctgtaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaatgttctagcccagctgagtgactctgatgttgagtgactccagacatgatctgtaa 620

                                
Query: 421 aaataggcataaaagttgtgt 441
           |||||||||| ||||||||||
Sbjct: 621 aaataggcatgaaagttgtgt 641


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space:   359424
Effective search space used:   359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no332_g10.g1 MSMg01no332_g10.g1 CHROMAT_FILE:
MSMg01no332_g10.g1 PHD_FILE: MSMg01no332_g10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:48 2005
         (637 letters)



>mm_chrX_141516480_141517516
          Length = 1037

 Score =  687 bits (355), Expect = 0.0
 Identities = 373/379 (98%)
 Strand = Plus / Minus

                                                                        
Query: 259  agtaggtagaaatttagagcatactttttgtccatcaacagaaaaatagataaagaaaat 318
            |||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||
Sbjct: 1037 agtaggtagaaatttagagcatccttggtgtccatcaacagaaaaatagataaagaaaat 978

                                                                        
Query: 319  gctatacaaataaaagattgaattatattcagctgtaaagaaaacaataaaatcctaata 378
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 977  gctatacaaataaaagattgaattatattcagctgtaaagaaaacaataaaatcctaata 918

                                                                        
Query: 379  tttgcagaaaatgaaatcaactggaaatcattatgttaaaataagcctggttcaaatgaa 438
            |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 917  tttgcagaaaatgaaatcaactggaaatcattatgttagaataagccaggttcaaatgaa 858

                                                                        
Query: 439  tattgcatgctttttctcgtgcagaatatacgttcaaatttgtatagatgtttataaaca 498
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857  tattgcatgctttttctcgtgcagaatatacgttcaaatttgtatagatgtttataaaca 798

                                                                        
Query: 499  tatacatgaagtgaaactgggtcttggaaattacaaaggggagcataacagaaaaggaaa 558
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 797  tatacatgaagtgaaactgggtcttggaaattacaaaggggagcataacagagaaggaaa 738

                                                                        
Query: 559  acattccaagtgaccaacaggggagggggtgtacaaaatagttgccagtagagttggcat 618
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737  acattccaagtgaccaacaggggagggggtgtacaaaatagttgccagtagagttggcat 678

                               
Query: 619  gacaggaaatcaaaaagtg 637
            |||||||||||||||||||
Sbjct: 677  gacaggaaatcaaaaagtg 659


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space:   643929
Effective search space used:   643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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