Query= MSMg01no332_l07.b1 MSMg01no332_l07.b1 CHROMAT_FILE:
MSMg01no332_l07.b1 PHD_FILE: MSMg01no332_l07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:26 2005
(681 letters)
>mm_chrX_16653650_16654730
Length = 1081
Score = 1259 bits (651), Expect = 0.0
Identities = 677/693 (97%), Gaps = 12/693 (1%)
Strand = Plus / Plus
Query: 1 ttggcttggagatcacttctagctcatgaacccaggacactactccagatcatcatattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttggcttggagatcacttctagctcatgaacccaggacactactccagatcatcatattt 248
Query: 61 cagtctttcaagtccgagtctcatgtttcccacaactatttgtcatttattaagatatgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 cagtctttcaagtccgagtctcatgtttcccacaactatttgtcatttattaagatatgg 308
Query: 121 tggaacctttaagaaatagagtctagttggaggctgttagattattaagaaatacccttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tggaacctttaagaaatagagtctagttggaggctgttagattattaagaaatacccttg 368
Query: 181 gaagagattcaattttgtgagaccttagtctctataacatcctgcatcactttgtctaca 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 369 gaagagattcaattttgtgagaccttagtctctataacatcttgcatcactttgtctaca 428
Query: 241 cacacacacacacacacacacacac------------tcacacactattgtgttattatt 288
||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 429 cacacacacacacacacacacacacacacacacacactcacacactattgtgatattatt 488
Query: 289 tgttatgaggctctcgccagagttaatctataactttgaatctctaggcctgtgagctaa 348
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tgttatgaggctcttgccagagttaatctataactttgaatctctaggcctgtgagctaa 548
Query: 349 acatttttttcagcctcaggtattttttatagtaatggaaaacagaataataaagaagct 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 acatttttttcagcctcaggtattttttatagtaatggaaaacagaataataaagaagct 608
Query: 409 ctcttcttgcaattcttgtctgtaagaattaaggtcatgtatgttcaagataaagccagg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ctcttcttgcaattcttgtctgtaagaattaaggtcatgtatgttcaagataaagccagg 668
Query: 469 gagaaaatcctacactagtttttctttgcccactaaaatttccttggactagttctggga 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 gagaaaatcctacactagtttttctttgcccactaaaatttccttggactagttctggga 728
Query: 529 tgcaatttcacaatataatgagtgtccatgctactacctctttaaccacatttcccctgc 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 tgcaatttcacaatataatgagtgtccatgctactacctctttaaccacatttcccctgc 788
Query: 589 ataaattgcaaccacaaagtacaagggtttctgatccagtctacctttagctctacatcc 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 ataaattgcaaccacaaagtacaagggtttctgatccagtctacctttagctctacatcc 848
Query: 649 aatagacataatctgcttatattacaaaaggta 681
| |||||||||||||||||||||||||||||||
Sbjct: 849 agtagacataatctgcttatattacaaaaggta 881
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space: 718641
Effective search space used: 718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no332_l07.g1 MSMg01no332_l07.g1 CHROMAT_FILE:
MSMg01no332_l07.g1 PHD_FILE: MSMg01no332_l07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:26 2005
(724 letters)
>mm_chrX_16748432_16749554
Length = 1123
Score = 990 bits (512), Expect = 0.0
Identities = 552/566 (97%), Gaps = 3/566 (0%)
Strand = Plus / Minus
Query: 1 actgtgtatattttttctctaccttttcccccactttccctaactttccaaggaaaaaca 60
|||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 563 actgtgtata-tttttctctaccttttctcccacttcccctaactttccaaggaaaaaca 505
Query: 61 catgcagccctagttgatatgtctcaaatcttctctctcaccttctctctttctatgcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 catgcagccctagttgatatgtctcaaatcttctctctcaccttctctctttctatgcag 445
Query: 121 tgttcagtggtgggctttccttcctatggcttcttgagtgtgtggtctgatgtctcattc 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 444 tgttcagtggtgggctttccttcctatggcttcttgggtgtgtggtctgatgtctcattc 385
Query: 181 tgttgttattgtcttgttcagcactcttcaagatagttctttgatcagcagaagaaaact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgttgttattgtcttgttcagcactcttcaagatagttctttgatcagcagaagaaaact 325
Query: 241 gggttgtcatagcatggtccacatgcatgcctttactgattgggccttactggtcagatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gggttgtcatagcatggtccacatgcatgcctttactgattgggccttactggtcagatc 265
Query: 301 tctaaattgacctcttgctttatttccactgtagcctagttatctgaagaactctgacaa 360
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tctaaattgatctcttgctttatttccactgtagcctagttatctgaagaactctgacaa 205
Query: 361 tattggttcaaaccttggctctacagactactatgtgtgtatccttgaccaacttactga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 tattggttcaaaccttggctctacagactactatgtgtgtatccttgaccaacttactga 145
Query: 421 agttccctgagctttagtgtttcattgataagatggggctattcaaagtctactgagagt 480
||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 144 agttccctgggctttagtgtttcattgataagatggggcgattcaaagtctactgagaga 85
Query: 481 ggggattgctgtgggcagtaaattattccaagcagatgaagcacttgaaaagagtacctt 540
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||
Sbjct: 84 ggggattgctgtgggcagtaaattattccaagcagatgacgtacttgaaaagagtacttt 25
Query: 541 cggggaggggggggaaaaaagaaaaa 566
|||| ||||||| ||||||||||||
Sbjct: 24 cgggaagggggg--aaaaaagaaaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 724
Length of database: 1123
Length adjustment: 10
Effective length of query: 714
Effective length of database: 1113
Effective search space: 794682
Effective search space used: 794682
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
