BAC Information

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BAC

Clone NameMSMg01-333O03
ChromosomeX (Build37)
Map Location 138,975,113 - 139,186,095
singlet/doubletdoublet
Overlap geneLOC100039086, EG436235, Tmem164
Upstream geneCol4a5, Irs4, LOC633596, EG666488, LOC622901, EG436234, EG622956, Gucy2f, LOC623006, LOC100039023, Nxt2, EG434858, Kcne1l, Acsl4, Ppia-psx_1100.1, EG633736, EG245651
Downstream geneAmmecr1, Rgag1, LOC209541, Chrdl1, Pak3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-333O03.T7 (MSMg01no333_o03.b1)MSMg01-333O03.TJ (MSMg01no333_o03.g1)
ACCAG449521AG449522
length742731
length of high quality
(start - end)		379 (45 - 423)339 (83 - 421)
definitionCHROMAT_FILE: MSMg01no333_o03.b1 PHD_FILE: MSMg01no333_o03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:09 2005CHROMAT_FILE: MSMg01no333_o03.g1 PHD_FILE: MSMg01no333_o03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,185,763 - 139,186,095)(138,975,113 - 138,975,451)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCANAAATCCGCGG
AATTCCATCTGGTTTGCCTCCCATGAGGGTAGGTGGGCTTATCAATACCC
AGAGCTGCCAAATTTAGTACATGAAAACACAGGACACCAAGTTAAAATGC
AATTCCAGAGAAACAATGAATAACATTTTTGTGTAAGTAGGCTGGAAGTG
TTGCATGAAACATATTTCTATTAAAACATTGCTTGATTTTTATGTGAAAA
TTGGATGTAACTGGGCATTCTGAATTTCCCTACAACTCTAACAAACTGCC
ACCCTCGACTCTAAACCCCACTTGGATTTTGTTTGTTTCTACATGTCTAC
CCAAGTGATTTTTCTAAAGTGCTGTTATCATGACAGGAATAATGGAAGCC
AAAAGAATCTTATCGTTTGACCACCCCCATCAGCTTCCTGAACTTAGGGG
TGACACAGGACTGGACTCCAGGCTGGGAAGACCCACAATTTGGTCTCCAA
CTGCCATTAAGGCCAAAACAGCCTTTATAAAATTTGCTAACCATGCGATT
TCTAGATTCTCAGATACAGCACCCTGATCTGCAACCCTGAGACCTCCCCT
CACCACATGTGCATGCTGAACAACAGTTCCAGATGGAATGAGGTCAGCCA
TTCCATGCTGTGTGTTTGCTCTTAGACTAAACTACTCCATGGGACTGAGG
ATTAACCAACGCCTAAACCTTATGTTTGCAGGGTTCTTTTAA

TCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCTTTGCCCAGCAGAAT
CCCACCACCTGGAAGTTAACTTATTTTTTTCTAATTTATTTCTCACAGGT
TTCTAATTTTATTTTTAAATTTTACATGGCCTGAGATCTCTATTTTCTTA
ATTTTTATTGTTAATTATTTTAAAATTAGCATGTAAAACATTAGATTTCA
TTATAGTGTTTTCAAGTATAATTTGTCTTTGTTGATACTCCTCCTCTCTC
CACTCTCCCCTTCTACACCCTCTTGTATTCAGGTTACTTGTGTGCGATTG
CACTCCCCTCTTCCCCAACAAGAGATTTCTATTTTCTAAAGGTGGGATAA
CAGACTACTTACTACCCAACCTACCCCCTAGACTGATGGTAGAGCAGGCA
TGTAACTGGCCTGTAAGGACACTGTCTCTACCTCTGTGACTTGATAGTTT
GCTTCGCTGTTTGGTGCTAAAGACTGAACCCAGGACCTCACGTGTGCTAG
GCAAGTGTTCTATCATGAAACTAAACACCCAGCCCATCTCTACTTCTAAT
GTGGACTCCTGTGAGCCTAGAATACGTCAAGCGAGTGTGTGTCTTTCTGT
GTGTGTGTGTCTTTCTGTGTGCGTATCTTTCTGTGTGTGCGAGTGTCTTT
CTGTGTGTGTATCTTTCTGTGTGTGTGTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no333_o03.b1 MSMg01no333_o03.b1 CHROMAT_FILE:
MSMg01no333_o03.b1 PHD_FILE: MSMg01no333_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:09 2005
         (379 letters)



>mm_chrX_139185317_139186095
          Length = 779

 Score =  582 bits (301), Expect = e-170
 Identities = 325/333 (97%)
 Strand = Plus / Minus

                                                                       
Query: 44  cttatcaatacccagagctgccaaatttagtacatgaaaacacaggacaccaagttaaaa 103
           |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 779 cttatcaatacccagagctgccaaatttagtacatgaaaatacaggacaccaaattaaaa 720

                                                                       
Query: 104 tgcaattccagagaaacaatgaataacatttttgtgtaagtaggctggaagtgttgcatg 163
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 tgcaattccagagaaacaatgaataacatttttgtgtaagtaggctggaagtgttgcatg 660

                                                                       
Query: 164 aaacatatttctattaaaacattgcttgatttttatgtgaaaattggatgtaactgggca 223
           |||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 659 aaacgtatttctattaaaactttgcttgatgtttatgtgaaaattggatgtaactgggca 600

                                                                       
Query: 224 ttctgaatttccctacaactctaacaaactgccaccctcgactctaaaccccacttggat 283
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ttctgaatttccctacaactctaacaaactgccaccctcgactctaaaccccacttggat 540

                                                                       
Query: 284 tttgtttgtttctacatgtctacccaagtgatttttctaaagtgctgttatcatgacagg 343
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 539 tttgtttgtttctacacgtctacccaagtgatttttctaaagtgctgttatcatgacaag 480

                                            
Query: 344 aataatggaagccaaaagaatcttatcgtttga 376
           ||||||||||||||||||||||||||| |||||
Sbjct: 479 aataatggaagccaaaagaatcttatcatttga 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no333_o03.g1 MSMg01no333_o03.g1 CHROMAT_FILE:
MSMg01no333_o03.g1 PHD_FILE: MSMg01no333_o03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:09 2005
         (339 letters)



>mm_chrX_138974913_138975651
          Length = 739

 Score =  656 bits (339), Expect = 0.0
 Identities = 339/339 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgctttgcccagcagaatcccaccacctggaagttaacttatttttttctaatttatttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgctttgcccagcagaatcccaccacctggaagttaacttatttttttctaatttatttc 260

                                                                       
Query: 61  tcacaggtttctaattttatttttaaattttacatggcctgagatctctattttcttaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcacaggtttctaattttatttttaaattttacatggcctgagatctctattttcttaat 320

                                                                       
Query: 121 ttttattgttaattattttaaaattagcatgtaaaacattagatttcattatagtgtttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttattgttaattattttaaaattagcatgtaaaacattagatttcattatagtgtttt 380

                                                                       
Query: 181 caagtataatttgtctttgttgatactcctcctctctccactctccccttctacaccctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caagtataatttgtctttgttgatactcctcctctctccactctccccttctacaccctc 440

                                                                       
Query: 241 ttgtattcaggttacttgtgtgcgattgcactcccctcttccccaacaagagatttctat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgtattcaggttacttgtgtgcgattgcactcccctcttccccaacaagagatttctat 500

                                                  
Query: 301 tttctaaaggtgggataacagactacttactacccaacc 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttctaaaggtgggataacagactacttactacccaacc 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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