BAC Information

Click to search

BAC

Clone NameMSMg01-334B21
ChromosomeX (Build37)
Map Location 101,063,182 - 101,063,433
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668369, Dmrtc1a, 1700011M02Rik, 1700018G05Rik, EG331480, EG668382, LOC668387, EG245545, LOC100042610, EG621205, Nap1l2, LOC668217, 4930519F16Rik, LOC100042615, Cdx4, LOC671052, Chic1, Tsx, Tsix, Xist, Rps12-ps1, LOC668406, LOC676246, ENSMUSG00000043661, LOC668412, LOC668415, B230206F22Rik, Cnbp2, LOC100042640, Slc16a2, EG621381
Downstream geneEG668426, LOC668430, Rnf12, C77370, Vcp-ps, EG621542, Uprt, Zdhhc15, Magee2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334B21.T7 (MSMg01no334_b21.b1)MSMg01-334B21.TJ (MSMg01no334_b21.g1)
ACCAG449693AG449694
length581714
length of high quality
(start - end)
113 (66 - 178)252 (371 - 622)
definitionCHROMAT_FILE: MSMg01no334_b21.b1 PHD_FILE: MSMg01no334_b21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:26 2005CHROMAT_FILE: MSMg01no334_b21.g1 PHD_FILE: MSMg01no334_b21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAAATTTGGGCGCTAAAGACTCACTATATTCGGATCGCAGGGAATCTCC
CTGTTTACAATAGAAGTCTCTAGCTTGAGAATCAGTATCATGGCCTCAGG
TGGTTATCTATTTTCTATTCATTTATTTTGGAGGCAACGNTCTTTCTATG
TAGNCCAAGCTAGCCTCAAGCTTGCTATATAGATGCTGGAACAGGGTGGC
AAGGATGCTAAAAATGGGCCAAAGGGGAAAAGGAAAAAACCCCCCCCCCC
TTTTTGGGATATTGGGGAAAAAAAAAAAAAAATTGGGGGGCACTTTTTTA
TAACCCCAAAAAGGGGGGGGAAAAAAGGGGGGGGCTACATAAAAAAAAAA
AAAGGAAAAGGGGGAAACCTCCCCCCCCCCCCCCCCCCCACAAAAAAATT
TTTTTTTTTTTTTTTTTTTTTATTAAAAAAAAAGGGGGGGGGGGGGAGAA
AATAAAATATACCTCTTTCTTCTGTTATGAGGAAGACTCAAGGACAAATG
AAAAAAAAAACATAAGATTATAATATTTCACATTTCTTTATTTTATTTTG
TGTTTAGGATTATTTCTGAGGTTACGAATAT
CATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXTTTCCTATCAGGACCTAA
GAAGGTCTGCCAAAAAAAAGTGATAAGTGTTTACCCATAACAAGTGGGAC
TTTTTTTTATTACCCCCCACCTATAATAATTCCCAACTCATGTTTCAATA
ACTTATTTGACCATCAAGCTGGACTTGGATGGAATTGTGTCTTTGATCTG
TCAGTGCCCTACCTGGAGTGAATAAGCATATCTATATTTCCCAAGTAAAG
TAATGGAATACATTGCTACCTGAATACAGACTTAATGGAACAAAAGTTTA
GGTGGAACACTTGCTTTTTTCAGGCAATGGATGGCAAGACACACAACTAG
AAGGCCCACAAGATATGGCAAGTTCCAATCTTGAAACAGCTTCAGGGGAA
GATGCAGAACCATGGTGGGGACTGGATCTCACTCTGACTTAGGCTTACAA
GTCAGCACACATCACATATCAACTTTAGCAAAATCTGTGGACTCAGGGTA
GGGATCAAATATAACTCTAACTAAGATCCATAGACATGTGGGGACTTTCA
GAATTCATATTGAAATCTATATAAACCCAAGTATTAAGTCCAAGCTGACA
TTGGTCAATATGTGAGTCTCAGAGGAAGGCTAGAGAAAGAGCTTCTGGCC
CCGAATACTAGTCTCACAGGNGGAAAAGGAAACTCTAATACTATATCCAT
TCCTGAACATTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_b21.g1 MSMg01no334_b21.g1 CHROMAT_FILE:
MSMg01no334_b21.g1 PHD_FILE: MSMg01no334_b21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:27 2005
         (252 letters)



>mm_chrX_101062982_101063633
          Length = 652

 Score =  472 bits (244), Expect = e-138
 Identities = 250/252 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttccaatcttgaaacagcttcaggggaagatgcagaaccatggtggggactggatctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttccaatcttgaaacagcttcaggggaagatgcagaaccatggtggggactggatctc 260

                                                                       
Query: 61  actctgacttaggcttacaagtcagcacacatcacatatcaactttagcaaaatctgtgg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 actctgacttaggcttacaagtcagcacacatcacatatcaactttagcagaatctgtgg 320

                                                                       
Query: 121 actcagggtagggatcaaatataactctaactaagatccatagacatgtggggactttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actcagggtagggatcaaatataactctaactaagatccatagacatgtggggactttca 380

                                                                       
Query: 181 gaattcatattgaaatctatataaacccaagtattaagtccaagctgacattggtcaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 gaattcatattgaaatctatataaacccaagtattaagtccaagctgacatcggtcaata 440

                       
Query: 241 tgtgagtctcag 252
           ||||||||||||
Sbjct: 441 tgtgagtctcag 452


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space:   156249
Effective search space used:   156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)