BAC Information

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BAC

Clone NameMSMg01-335H15
ChromosomeX (Build37)
Map Location 151,706,347 - 151,706,846
singlet/doubletsinglet
Overlap geneAcot9
Upstream gene4930524N10Rik, EG434879, LOC667313, 4930542N07Rik, EG434881, LOC100040899, LOC667331, LOC100040925, LOC100040937, Magea6, Magea3, LOC626034, Magea8, Magea2, Magea5, Magea1, 1700042B14Rik, LOC245676, Amd-ps1, LOC667369, Sat1
Downstream geneLOC667383, Prdx4, LOC667394, Ptchd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-335H15.T7 (MSMg01no335_h15.b1)MSMg01-335H15.TJ (MSMg01no335_h15.g1)
ACCAG450723AG450724
length718739
length of high quality
(start - end)
500 (62 - 561)403 (77 - 479)
definitionCHROMAT_FILE: MSMg01no335_h15.b1 PHD_FILE: MSMg01no335_h15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:15 2005CHROMAT_FILE: MSMg01no335_h15.g1 PHD_FILE: MSMg01no335_h15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGTCCTT
TCTCTGAACTTCAGTTTTAATGTGTGTAAACAAAAAACTGAAATAGGAAA
AAATATGTCATAAGCATATCATATATTTTCTTCTGAAAAATCAGTGAATA
TACCCAAACAGGTTTTGAAAATGCACAATATACATAAATCACATTCTTCC
ATGGTAATGAGGCATCAGCTGATCACTACACTAAGACGTGGCTCTTTTCC
TTCTCACCAGAAAGCTCTATCTCCACACAGGGCTCTCCGACCATAGAAGG
GGATCAGCATCTAAGCCTAACTATCACTTAGCGTGATCCCTTGGGGATGA
AAGACGAAAGTCCATACCTCCAGACTGTGGATACGCCTACTATCTCCCGC
AGCTTGTCTCGAACTGAAACAAAGATAAAGACTTTATTCCATGAAACCAA
GAAATAGCAAAGCTGGGTTAAGGCAAGATGGTCAGGAACTAAGGAAAGTT
TCTCATGCACTCAAAATGTATCAAAAGATTCAGGAATTCCATCCAGTGCC
ACTAGGAACAGTACAGGGAAGGAATCAGGTCTCTGTTCTCTCAATTATGC
CGCTTCCTCAGCGTANATACGCATAATTTTTTGTCAATTACAGAGGCTTA
TTGAAATAACTCTAAAATTAACGTTTCCATTTTTTTACCCAAGGGGCTTT
ATCTTTATCCTAAAATTN
NCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAAAGGCT
GAGAAGCAAGCTGAAAAAATGATCAACATTCTTAATCATCAGGGAAATGC
AAATCAAAACAATCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAG
ATCAAAAATTCAGGTGACAGCAGATGCTGGTGAGGATGTGGAGAAAGAGG
AACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTCCAACCACTGTGGA
AATCAGTCTGGCAGTTCCTCAGAAAATTGGACATAGTACTACCAGAGGAT
CCTGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAA
GAAGGACACATGCTCCACTATGTTCATAACAGCCTTATTTATAATAGCCA
GAAGCTGGAAAGAACCCAGATGCCCCTCCATAGAGGAATGGATACCGAAA
ATGTGGTATATTTACACCATGGAGTACTATTCCGTTATTACCAAGAACGA
ATTTATGAAATTGCTAGGCTAATGGATGGACCCGGAGGGCATCATCCTAA
GTGAGGTACCCCCTTCTCTTTGGGACCTCTTTTTAATCGCTCCCCCTGAT
TATTGGACCTTTATCCTTAATTTTTGTTACTCCCGCTACTTTATCTCCTT
TTTTTTCCGCCTTGACTCTCCTCCCCAATGTTTTATTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no335_h15.b1 MSMg01no335_h15.b1 CHROMAT_FILE:
MSMg01no335_h15.b1 PHD_FILE: MSMg01no335_h15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:15 2005
         (500 letters)



>mm_chrX_151706147_151707046
          Length = 900

 Score =  951 bits (492), Expect = 0.0
 Identities = 498/500 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagttttaatgtgtgtaaacaaaaaactgaaataggaaaaaatatgtcataagcatatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 cagttttaatgtgtgtaaacaaaaaactgaaataggaaaaaatatgtcataagcatatca 641

                                                                       
Query: 61  tatattttcttctgaaaaatcagtgaatatacccaaacaggttttgaaaatgcacaatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 tatattttcttctgaaaaatcagtgaatatacccaaacaggttttgaaaatgcacaatat 581

                                                                       
Query: 121 acataaatcacattcttccatggtaatgaggcatcagctgatcactacactaagacgtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 580 acataaatcacattcttccatggtaatgaggcatcagctgatcactacactaagacgcgg 521

                                                                       
Query: 181 ctcttttccttctcaccagaaagctctatctccacacagggctctccgaccatagaaggg 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 520 ctcttttccttctcaccagaaagctctatctccagacagggctctccgaccatagaaggg 461

                                                                       
Query: 241 gatcagcatctaagcctaactatcacttagcgtgatcccttggggatgaaagacgaaagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gatcagcatctaagcctaactatcacttagcgtgatcccttggggatgaaagacgaaagt 401

                                                                       
Query: 301 ccatacctccagactgtggatacgcctactatctcccgcagcttgtctcgaactgaaaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ccatacctccagactgtggatacgcctactatctcccgcagcttgtctcgaactgaaaca 341

                                                                       
Query: 361 aagataaagactttattccatgaaaccaagaaatagcaaagctgggttaaggcaagatgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 aagataaagactttattccatgaaaccaagaaatagcaaagctgggttaaggcaagatgg 281

                                                                       
Query: 421 tcaggaactaaggaaagtttctcatgcactcaaaatgtatcaaaagattcaggaattcca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tcaggaactaaggaaagtttctcatgcactcaaaatgtatcaaaagattcaggaattcca 221

                               
Query: 481 tccagtgccactaggaacag 500
           ||||||||||||||||||||
Sbjct: 220 tccagtgccactaggaacag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space:   436100
Effective search space used:   436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)