BAC Information

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BAC

Clone NameMSMg01-335J15
ChromosomeX (Build37)
Map Location 121,307,982 - 121,308,330
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039751, LOC100039763, LOC665281, EG625591, LOC665325, EG382265, LOC665364, EG546368, LOC100038940, LOC100038941, EG625699, LOC100038942
Downstream geneLOC100039828, EG434843, EG665463, EG665522, LOC100038969, LOC100038978, EG665579
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-335J15.T7 (MSMg01no335_j15.b1)MSMg01-335J15.TJ (MSMg01no335_j15.g1)
ACCAG450819AG450820
length736796
length of high quality
(start - end)
349 (59 - 407)310 (75 - 384)
definitionCHROMAT_FILE: MSMg01no335_j15.b1 PHD_FILE: MSMg01no335_j15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:25 2005CHROMAT_FILE: MSMg01no335_j15.g1 PHD_FILE: MSMg01no335_j15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:25 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CGCTATACGACTCACTATTTGCAGAGGATCCGCGGAATTCAAAAACATTC
CACGGACATTCTTCTCTGGTAAGGTTCAGACCTACAGCTTAAGAACCACA
GATCTTCTAAACTACTGTATGGACCAAGGGAACTTCTGATATGCCCATTC
TGAACCAGGGATCCTCAGATCATCCCCAATAGCCTAAGTGACCTTCATCT
TACCTGTCTAGAACCAATGTGCTGGGGCTGGAGAGATGGCTCAGCAGTTA
AAAGCACTGACTTCTCTTCCACAGGTCCTGAGTTCAATTCTCAGCAATCA
CTTGTTGTACCACAACCATCTGTCATGGGACCTGATGCCACCTTATGGTG
TGTCTGAAGACAATGACAGTATACCCACATACATGAAATAGAACCTATGT
GACTCACAACTTACACCTATAACTCTAGGGGGATTCAGATGTAACCCCCG
AAATCATATATGCTAGAAACTCCCGAGCATTGAAGGGACCATTATCATAT
GAGAACCATATATCCCATAATTTCGTTAATTTCCCTCAAAATTATCATTT
CTTAATAAAGAGGTCTTATTTGTTCTCAATAAATGTATGATGTCCTTGAT
ACCTATTGACCTGTTATCTTTTAGGCCTTAATTTCCTTATCTTCACCACC
CCTTTTTTTTCCTCCCCTCCCTCGGCTTTTTCTTACTATTCCCTTTGGCC
GGTACCTTTTTACTACTCTTTTTCTTGGCCCCCTCC
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTACTCAAAGTCTTTGGAGACAACAG
GGATTTTATTGGGTTCTCATGGAGAATGGGAGAGTGTTTGTGCTCCATTA
AAAAGGTACTCACATTCACTATTTTGATGCCTTTCTTTCTATTTGAGTGT
GCTTTGTACTTTTGTCTGCTATGTGTTGTGTTCTGTGTTCTTTGTTACTA
ACTCTAGGGTTCTTCCCATACTTGGAAAATGAAAGTCAGTTTGAAAACCT
TTCATATTTGTTCTCTGTATATAAACTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCCCTCCTCCTTTTTT
TTTCTATTTTAACTTTCCCACACCTTTTTTTTCCCTTTTATTCTCCCTTT
TTTCTATAATTTTTTCTTCTTTTTATCTTCCTCCCTTTTCTTCCTTTTTT
CTTATTTCCCCCGTTTTCTTCCTTTTTCTCCCTGTCCCCCTCTTTTTTTT
CTTTCTTTTCCCCTTTTCTCCCTTTTCTTTCCCCCCTTCCTACCTTTTTT
TTTATCCTTATCCCTTCCCCCCCCCTTTTATTCATATAAAATAACCCCCT
TCTATTACTTACCCCTTTTTTTTCTTCTTCCTCTCCCTCTCTTTCTTTTT
CCCCTTCTTTTCCCTTTCGTGTTCTCTCTATATCCCGCCCCTTTTTTCCT
CCCTTTCTTTTCCCTTTCTTTTCTTTCTCCCCTTATCTTTTTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no335_j15.b1 MSMg01no335_j15.b1 CHROMAT_FILE:
MSMg01no335_j15.b1 PHD_FILE: MSMg01no335_j15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:25 2005
         (349 letters)



>mm_chrX_121307966_121308714
          Length = 749

 Score =  580 bits (300), Expect = e-170
 Identities = 339/352 (96%), Gaps = 6/352 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcttctctggtaaggttcagacctacagcttaagaaccacagatcttctaaactactgt 60
           |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 365 ttcttctctggtaaggttcagacctacaacttaagaaccacagatcttccaaactactgt 306

                                                                       
Query: 61  atggaccaagggaacttctgatatgcccattctgaaccagggatcctcagatcatcccca 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 305 atggaccaagggaacttctgatctgcccattctgaaccagggatcctcagatcatcccca 246

                                                                       
Query: 121 atagcctaagtgaccttcatcttacctgtctagaaccaatgtgctggggctggagagatg 180
           ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 245 atagcctaagtgaccttaatcttacctgtctaggaccaatgtgctggggctggagagatg 186

                                                                       
Query: 181 gctcagcagttaaaagcactgact-tctcttccacaggtcctgagttcaattctcagcaa 239
           |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 185 gctcagcagttaaaagcactgactgt-tcttccacaggtcctgagttcaattctcagcaa 127

                                                                       
Query: 240 tcacttgttgtac-cacaaccatctgtcatgggac-ctgatgccaccttatggtgtgtct 297
            |||||||||| | ||||||||||||||||||||| | ||| ||||||||||||||||||
Sbjct: 126 ccacttgttgt-ctcacaaccatctgtcatgggacac-gattccaccttatggtgtgtct 69

                                                               
Query: 298 gaagacaatgacagtatacccacatacatgaaatagaacctatgtgactcac 349
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  gaagacaatgacagtatacccacatacatgaaatagaacctatgtgactcac 17


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space:   251600
Effective search space used:   251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)