BAC Information

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BAC

Clone NameMSMg01-335L10
ChromosomeX (Build37)
Map Location 68,654,597 - 68,833,313
singlet/doubletdoublet
Overlap geneMtmr1, Cd99l2, LOC667017, Hmgb3
Upstream geneLOC100040304, LOC628002, LOC628012, BC023829, EG547447, LOC666981, LOC100040409, LOC628053, LOC100040432, EG280121, LOC666993, Ppia-psx_466.1, EG628080, G630014P10Rik, LOC667013, Mtm1
Downstream geneLOC100040549, Gpr50, LOC654357, 2610030H06Rik, Gm1141, Prrg3, Fate1, Cnga2, Magea4, Gabre, Magea10, Gabra3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-335L10.T7 (MSMg01no335_l10.b1)MSMg01-335L10.TJ (MSMg01no335_l10.g1)
ACCAG450905AG450906
length722735
length of high quality
(start - end)
466 (118 - 583)350 (238 - 587)
definitionCHROMAT_FILE: MSMg01no335_l10.b1 PHD_FILE: MSMg01no335_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:34 2005CHROMAT_FILE: MSMg01no335_l10.g1 PHD_FILE: MSMg01no335_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,654,597 - 68,655,061)(68,832,964 - 68,833,313)
sequence
GCGGCGCTATACGACTCACTATATCCAGAGGATCCGCGGAATTACCACTT
ATCCCAGACTGGCCTGAAGTTGCCTCCCCAGTGCTGGGATTACAGTTGTA
CAATACACGTAGTTAGTCAGGTTTTTAACAAAACTTTTGACCCTCCAATA
AATGACCCCATTTATTTATGTTATTTTTATAATTAAAAAACATGATGCTA
ACACTTCCTAGTGATTCTTAATTAATTTTGTGTTTGTTGTTGTGTTTTGT
TTTGTTTGGGATACTGGGACTGGAACTTAGGAACTTACTGAAATAGAGCC
TCAGTCCTATATAGCATTCTTGTATGGCTTATTGGCCAGAACATCCAAAC
TTTTGTACAGAATTATCTTATACAGCAGTTGAACACTTAATGTAGCCTTA
TCTGTTTTATCTTCTTTTCTGAAGGTTCTCCTTGCTGGGGCAGTGAGAAT
TGCTGATAAAATAGAATCTGGGAAAACTTCTGTGGTCATCCACTGCAGTG
ATGGGTGGGATCGAACATCCCAGCTCACATCTCTGGCAATGCTGATGTTG
GACAGTTATTACCGGACCATTAAAGGATTTGAGGCTCTCATAGAAAAGGA
GTGGATAAGCTTTGGACACAGGTTTGCCCTGGTATGTTTGTCTGGCTTAT
GTGTAACTGTTTTATTATTTACGTACATGTGCCTGGCATTTGGNAACATC
TATTTACTTGCATCCGCAACCT
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGGACAGCCAAACCTACACAAAGAACCATT
GTCTTGAAAAACCAAAGAGAGAGAGAGAGAGAGAGGGAGAGAAAGAGAAT
AAGCCAGGAGGGGGGGACACATGTATTTAATTCCAGCACGCAAAAGACAG
ATCTCTCTGAGTTCAAGGTAAGCCTGGTCTACAGAATGAGTTTCAGGACA
GCCAGGGCTATACAGTAAAACTCTGTTTTGAAAAACCAAAAGAAAGGAAG
GAAAGAAGGGAGGGAAGAAGAGAGAGGAGAAAGAGAGAGAGCGAGAGAGA
GACAGAGACGGAGAGAAACCAAATGGGTTTATATAGTGAGTCCCAGCACA
GCTAAGGTTCCATAGTTAAGTCCTGTGTTGCATTCAGAAAATACGAAGTT
GGAAGCAGACAAGGTGGTTCCCACCTGAAGTTCTAGCACTTGGGAAAACA
AGGCATGGCAATTGTGAGTGCATGGTAAGTTTAAGATATCTAAGTGTATT
TGCTTTATGGTCAGCCAAGGCTAACAAATACTGAGTGTATGTATTAGGTA
TCTTTCTTGTTGCTGTGATAAAAATACCTGACAGAAGCTAATGCAAGGAA
GGGTGTTGTCTGCCTCCCCGTTTGAAACTATCCCGGCAGCTCTATAGGAC
AGACAAGGCAGCAGGAGTATAAGGGAGTCCATGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no335_l10.b1 MSMg01no335_l10.b1 CHROMAT_FILE:
MSMg01no335_l10.b1 PHD_FILE: MSMg01no335_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:34 2005
         (466 letters)



>mm_chrX_68654396_68655261
          Length = 866

 Score =  861 bits (445), Expect = 0.0
 Identities = 460/465 (98%)
 Strand = Plus / Plus

                                                                       
Query: 2   aggtttttaacaaaacttttgaccctccaataaatgaccccatttatttatgttattttt 61
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 aggtttttaacagaacttttgaccctccaataaatgaccccatttatttatgttattttt 261

                                                                       
Query: 62  ataattaaaaaacatgatgctaacacttcctagtgattcttaattaattttgtgtttgtt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ataattaaaaaacatgatgctaacacttcctagtgattcttaattaattttgtgtttgtt 321

                                                                       
Query: 122 gttgtgttttgttttgtttgggatactgggactggaacttaggaacttactgaaatagag 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gttgtgttttgttttgtttgggatactgggactggaacttaggaacttactgaaatagag 381

                                                                       
Query: 182 cctcagtcctatatagcattcttgtatggcttattggccagaacatccaaacttttgtac 241
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cctcagtcctagatagcattcttgtatggcttattggccagaacatccaaacttttgtac 441

                                                                       
Query: 242 agaattatcttatacagcagttgaacacttaatgtagccttatctgttttatcttctttt 301
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 442 agaattatcttatacagcagttaaacacttaatgtagccttatctgttttatcttctttt 501

                                                                       
Query: 302 ctgaaggttctccttgctggggcagtgagaattgctgataaaatagaatctgggaaaact 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ctgaaggttctccttgctggggcagtgagaattgctgataaaatagaatctgggaaaact 561

                                                                       
Query: 362 tctgtggtcatccactgcagtgatgggtgggatcgaacatcccagctcacatctctggca 421
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tccgtggtcatccactgcagtgatgggtgggatcgaacatcccagctcacatctctggca 621

                                                        
Query: 422 atgctgatgttggacagttattaccggaccattaaaggatttgag 466
           ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 622 atgctgatgttagacagttattaccggaccattaaaggatttgag 666


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no335_l10.g1 MSMg01no335_l10.g1 CHROMAT_FILE:
MSMg01no335_l10.g1 PHD_FILE: MSMg01no335_l10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:34 2005
         (350 letters)



>mm_chrX_68832575_68833324
          Length = 750

 Score =  669 bits (346), Expect = 0.0
 Identities = 349/350 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagtttcaggacagccagggctatacagtaaaactctgttttgaaaaaccaaaagaaagg 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 739 gagtttcaggacagccagggctacacagtaaaactctgttttgaaaaaccaaaagaaagg 680

                                                                       
Query: 61  aaggaaagaagggagggaagaagagagaggagaaagagagagagcgagagagagacagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 aaggaaagaagggagggaagaagagagaggagaaagagagagagcgagagagagacagag 620

                                                                       
Query: 121 acggagagaaaccaaatgggtttatatagtgagtcccagcacagctaaggttccatagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 acggagagaaaccaaatgggtttatatagtgagtcccagcacagctaaggttccatagtt 560

                                                                       
Query: 181 aagtcctgtgttgcattcagaaaatacgaagttggaagcagacaaggtggttcccacctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aagtcctgtgttgcattcagaaaatacgaagttggaagcagacaaggtggttcccacctg 500

                                                                       
Query: 241 aagttctagcacttgggaaaacaaggcatggcaattgtgagtgcatggtaagtttaagat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aagttctagcacttgggaaaacaaggcatggcaattgtgagtgcatggtaagtttaagat 440

                                                             
Query: 301 atctaagtgtatttgctttatggtcagccaaggctaacaaatactgagtg 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 atctaagtgtatttgctttatggtcagccaaggctaacaaatactgagtg 390


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 750
Length adjustment: 9
Effective length of query: 341
Effective length of database: 741
Effective search space:   252681
Effective search space used:   252681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)