Query= MSMg01no335_m18.b1 MSMg01no335_m18.b1 CHROMAT_FILE:
MSMg01no335_m18.b1 PHD_FILE: MSMg01no335_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:40 2005
(560 letters)
>mm_chrX_134642967_134643926
Length = 960
Score = 1044 bits (540), Expect = 0.0
Identities = 552/556 (99%)
Strand = Plus / Minus
Query: 5 gaattcaaactaatttacccattgtgatagcacagagctattgaaagttaagaatgttct 64
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 gaattcaaactaagttaaccattgtgatagcacagagctattgaaagttaagaatgttct 754
Query: 65 gtttcctctcccccaaccataactaatactccaacattctcaaataaaaatatagataat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 gtttcctctcccccaaccataactaatactccaacattctcaaataaaaatatagataat 694
Query: 125 aattatatagagtactgtttgaaacctaacttttaaaccttactcaagagctcgtgattc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 aattatatagagtactgtttgaaacctaacttttaaaccttactcaagagctcgtgattc 634
Query: 185 aggacaagcagtgtatttatttgcatagtcccttaatgtcttcaatgaatgccaaaagag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 aggacaagcagtgtatttatttgcatagtcccttaatgtcttcaatgaatgccaaaagag 574
Query: 245 agaaatcgtttccacaactaaactttctggaccatctctgacacattaatatatgttgat 304
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 agaaatcatttccacaactaaactttctggaccatctctgacacattaatatatgttgat 514
Query: 305 tcgcttgctatactcatctctgaacatgaagaaaaataatttcacccttttagcaaatga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tcgcttgctatactcatctctgaacatgaagaaaaataatttcacccttttagcaaatga 454
Query: 365 ctacatgggtatattatttaatctttagccaggattaattaaaaatgttagaatatgtct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ctacatgggtatattatttaatctttagccaggattaattaaaaatgttagaatatgtct 394
Query: 425 ttgagaaaaaaagaatgtataaaaatgcaaaagttgggatgactaaatgcctttttaaaa 484
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 393 ttgagaaaaaaagaatgtataaaaatgcaaaagtagggatgactaaatgcctttttaaaa 334
Query: 485 attaagctttaaactttatatgccccagtacaggggaaccccagggccaaaaagggggag 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 attaagctttaaactttatatgccccagtacaggggaaccccagggccaaaaagggggag 274
Query: 545 tgggtgggtgggtatg 560
||||||||||||||||
Sbjct: 273 tgggtgggtgggtatg 258
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space: 522500
Effective search space used: 522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no335_m18.g1 MSMg01no335_m18.g1 CHROMAT_FILE:
MSMg01no335_m18.g1 PHD_FILE: MSMg01no335_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:40 2005
(553 letters)
>mm_chrX_134471865_134472816
Length = 952
Score = 1046 bits (541), Expect = 0.0
Identities = 550/553 (99%), Gaps = 1/553 (0%)
Strand = Plus / Plus
Query: 1 tttgtttagctctgagccccattttttaatggggttatttgattttctggaatctacctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgtttagctctgagccccattttttaatggggttatttgattttctggaatctacctt 260
Query: 61 cttgagttctttataatattggatattagtcccctatctgatttaggataggtaaagatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgagttctttataatattggatattagtcccctatctgatttaggataggtaaagatc 320
Query: 121 ctttcccaatctgttggtggcctttttgtcttattgacagtgtcttatgccttacagaag 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 ctttcccaatctgttggtggcctttttgtcttattgacagtgtcttttgccttacagaag 380
Query: 181 ctttgcaattttatgaggtcccatttgtcaattctcaatcttacagcacaagccatttct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttgcaattttatgaggtcccatttgtcaattctcaatcttacagcacaagccatttct 440
Query: 241 gttctattcaggaattttcctgtgtgattcttaattgttggttttactatgctcccaaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttctattcaggaattttcctgtgtgattcttaattgttggttttactatgctcccaaat 500
Query: 301 caaaaataagtaacaaggacaaatactttttatattctttctgccactattcacaaaact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caaaaataagtaacaaggacaaatactttttatattctttctgccactattcacaaaact 560
Query: 361 acttattctaactatatagaaatcattgtaatatatagactttggatctggttaattttg 420
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agttattctaactatatagaaatcattgtaatatatagactttggatctggttaattttg 620
Query: 421 gtgtgagatttttttttgttttatttgcaagtttttttataatatttaattcaaaaaaat 480
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgtgagatttttttt-gttttatttgcaagtttttttataatatttaattcaaaaaaat 679
Query: 481 ttaaaaatgatttttaaatcagcacatgctacttgaaaatctacttgatgatatgtgaca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttaaaaatgatttttaaatcagcacatgctacttgaaaatctacttgatgatatgtgaca 739
Query: 541 aaatatagtcata 553
|||||||||||||
Sbjct: 740 aaatatagtcata 752
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 952
Length adjustment: 10
Effective length of query: 543
Effective length of database: 942
Effective search space: 511506
Effective search space used: 511506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
