Query= MSMg01no335_n15.b1 MSMg01no335_n15.b1 CHROMAT_FILE:
MSMg01no335_n15.b1 PHD_FILE: MSMg01no335_n15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:45 2005
(523 letters)
>mm_chrX_126583518_126584446
Length = 929
Score = 862 bits (446), Expect = 0.0
Identities = 489/506 (96%), Gaps = 6/506 (1%)
Strand = Plus / Minus
Query: 1 tatatcttgccccaaaatgctttctctctggatatcagcttttt-----tttctttcata 55
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 506 tatatcttgccccaaaatgctttctctctggatatcggctttttttttctttctttcata 447
Query: 56 attatgaagtgagcagctttgaactacaaggagcacaaaagtaggtcttttctctttcta 115
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 446 attatgaagtgagcagctttgaaccacaatgagcacaaaagtaggtcttttctctttcta 387
Query: 116 gttggcccactctagtaatttttcacaatgat-aaaaaatttactgacccaatagcctca 174
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
Sbjct: 386 gttggcccactctagtaatttttcacaatgataaaaaaatttactgaccaaatagcctta 327
Query: 175 ggagtaatgagatgggctgtgaaaatatgacattgcttacttcagagaagcctatatcat 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ggagtaatgagatgggctgtgaaaatatgacattgcttacttcagagaagcctatatcat 267
Query: 235 tcttaacaataaccccaaaacatagaagtgtttatgaagcccactttaatatacaaagga 294
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct: 266 tcttaacaataaccccaaaacatagaagtgtttatgaagcccaatttaatatacgaagga 207
Query: 295 gaagctatcatatacattttaaaataaataatttcatatcataacaatagagatacaaga 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaagctatcatatacattttaaaataaataatttcatatcataacaatagagatacaaga 147
Query: 355 ataataagatattctgagaggaataaaaactatattcatgtaaattttctttcaaggaac 414
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 146 ataataagatattctgagaggaataaaaactatattcatgtaaattttctttcaaggacc 87
Query: 415 actattaaaattgcattgttttgttttgttgttattgttatagtcttctaactaatttat 474
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 86 agtattaaaattgcattgttttgttttgttgttattgttatagacttctaactaatttat 27
Query: 475 aaaacacactttatcttctctgtctg 500
|||| |||||||||||||||||||||
Sbjct: 26 aaaagacactttatcttctctgtctg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 929
Length adjustment: 10
Effective length of query: 513
Effective length of database: 919
Effective search space: 471447
Effective search space used: 471447
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no335_n15.g1 MSMg01no335_n15.g1 CHROMAT_FILE:
MSMg01no335_n15.g1 PHD_FILE: MSMg01no335_n15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:45 2005
(561 letters)
>mm_chrX_126377196_126378156
Length = 961
Score = 994 bits (514), Expect = 0.0
Identities = 560/600 (93%), Gaps = 40/600 (6%)
Strand = Plus / Plus
Query: 1 aacttacaagccatggaatagaactcttgcagtgaggctattagtttcaggtaatttaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 aacttacaagccatggaatagaactcttgcagtgaggctattagtttcaggtaatttaaa 222
Query: 61 tctcagtgggaaccaagaaatggattttgaactaatatattttttgaaatcctcaaagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 tctcagtgggaaccaagaaatggattttgaactaatatattttttgaaatcctcaaagat 282
Query: 121 aggagattgtaatatttctgtgtaaagaaaaaaatctgtcattttcaagacaaagaggtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 aggagattgtaatatttctgtgtaaagaaaaaaatctgtcattttcaagacaaagaggtt 342
Query: 181 taaatttaatgaagtgattaaaagtaatttcaagatttatttctcctctataaatattat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 taaatttaatgaagtgattaaaagtaatttcaagatttatttctcctctataaatattat 402
Query: 241 tttttttgttggtgtaatggaaatttgctgaaaaattaggcctgttttcaatataatgcc 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tttttt-gttggtgtaatggaaatttgctgaaaaattaggcctgttttcaatataatgcc 461
Query: 301 aaataaaacgaaacacatctttaaaggtaggaagctttttgtattcaggggactgtaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 aaataaaacgaaacacatctttaaaggtaggaagctttttgtattcaggggactgtaaaa 521
Query: 361 tgacatgtttttgtggctatatagcccgtcctcatcagtcttttat------gatgatga 414
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 522 tgacatgtttttgtggctatatagcccgtcctcatcagtcttttattattatgatgatga 581
Query: 415 tgatgatg---------------------------------gtagcacctgctttcaaag 441
|||||||| |||||||||||||||||||
Sbjct: 582 tgatgatgatgatgatgatgatgacgatgatgatgatgacggtagcacctgctttcaaag 641
Query: 442 ggtatatcatactggcttttgtaccaggtaaacttttgtcttgataaattgttgtttcta 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 ggtatatcatactggcttttgtaccaggtaaacttttgtcttgataaattgttgtttcta 701
Query: 502 attttagagctgaaaggaaatgcacgactgttttaaagtacaggtagggactgtaatctt 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 attttagagctgaaaggaaatgcacgactgttttaaagtacaggtagggactgtaatctt 761
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
