Query= MSMg01no336_j16.b1 MSMg01no336_j16.b1 CHROMAT_FILE:
MSMg01no336_j16.b1 PHD_FILE: MSMg01no336_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:42 2005
(568 letters)
>mm_chrX_164565717_164566684
Length = 968
Score = 596 bits (308), Expect = e-174
Identities = 317/320 (99%)
Strand = Plus / Minus
Query: 5 gaattcttctctaactactgcatcttaggtacccactttctcaccccttcaaataaaatt 64
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaattcttctctaactactgtatcttaggtacccactttctcaccccttcaaataaaatt 262
Query: 65 gagtttaattctttgtacatcatggtctattttctcagttatagccatttcttatttctc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagtttaattctttgtacatcatggtctattttctcagttatagccatttcttatttctc 202
Query: 125 tttctcctcttcctcctcttcctccttcttattgcctattgtctacccctgtcttagtta 184
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttctcctcctcctcctcttcctccttcttattgcctattgtctacccctgtcttagtta 142
Query: 185 cttttgtattcctatgatggcacatcataatgaagtcaacttataaaagaaagtgtttaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 cttttgtattcctatgatggcacatcataatgaagtcaacttataaaagaaagtgtttaa 82
Query: 245 taggggaattgcttaagtttcaaaagggaagccatcatgttgggggaaatggcagcaggc 304
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 81 taggggaattgcttaagtttcagaagggaagccatcatgttgggggaaatggcagcaggc 22
Query: 305 aggcaggcatagtgctagag 324
||||||||||||||||||||
Sbjct: 21 aggcaggcatagtgctagag 2
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space: 534564
Effective search space used: 534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no336_j16.g1 MSMg01no336_j16.g1 CHROMAT_FILE:
MSMg01no336_j16.g1 PHD_FILE: MSMg01no336_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:42 2005
(554 letters)
>mm_chrX_164521269_164522221
Length = 953
Score = 1025 bits (530), Expect = 0.0
Identities = 548/554 (98%), Gaps = 1/554 (0%)
Strand = Plus / Plus
Query: 1 ataccctaactgtgaactcaatgaacattggctatagcatgtgtactaaaatagactact 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 ataccctaactgtgaactcaatgaacattggctatagcatgtctactaaaatagactact 260
Query: 61 acttcaaaaccaaatcaaagttgggtgagaggacagcatgtaaactacaccacagaggat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acttcaaaaccaaatcaaagttgggtgagaggacagcatgtaaactacaccacagaggat 320
Query: 121 ggaatttggaaatgtattgagctttaatttcattacaaattcttcattatacataataag 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaatttggaaatgtattgagctttaatttcattacaaattcttcattatacataataaa 380
Query: 181 tccctgttggggcactgaatgtagcaggtaagacaacggattgaattctaatttgttgtt 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 tccctgttggggcactgaatgtagcaggtaagacaagggattgaattctaatttgttgtt 440
Query: 241 tgttttatatagattcatttcaggaaatgaggttgaatttttcagcccatagcatccatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgttttatatagattcatttcaggaaatgaggttgaatttttcagcccatagcatccatt 500
Query: 301 cagctttgtttcaccatgaggttatattctcccgctcaagattctagaataatcttaggt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagctttgtttcaccatgaggttatattctcccgctcaagattctagaataatcttaggt 560
Query: 361 aattaagtgaaattttatttcaaatagaacaaacgaaaatttactccctggcttttatac 420
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 561 aattaagtgaaattttatttcaaatagaacaaatgaaaatt-actccctggcttttatac 619
Query: 421 tatggtatgtagtcaggatttatccccttacttatcctttcataacctccaacttttcaa 480
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 620 tatggtatgtagtcaggatttatccccttacttattctttcataacctccaacttttcaa 679
Query: 481 tgtccaagttactttattgaatttagagagagctatgtagatgtgacacattacaaaatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tgtccaagttactttattgaatttagagagagctatgtagatgtgacacattacaaaatg 739
Query: 541 tagttatggattct 554
||||||||||||||
Sbjct: 740 tagttatggattct 753
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 953
Length adjustment: 10
Effective length of query: 544
Effective length of database: 943
Effective search space: 512992
Effective search space used: 512992
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
