BAC Information

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BAC

Clone NameMSMg01-337G06
ChromosomeX (Build37)
Map Location 130,700,972 - 130,895,425
singlet/doubletdoublet
Overlap geneArl13a, 4732479N06Rik, LOC100040849, Tmem35, Cenpi
Upstream geneLOC100040794, Pcdh19, LOC100040831, Tnmd, Tspan6, Srpx2, Sytl4, LOC665889, Cstf2, Nox1, Xkrx
Downstream geneDrp2, Taf7l, LOC669370, LOC674122, Timm8a1, Btk, Rpl36a, Gla, Hnrph2, LOC665936, LOC665941, Armcx1, LOC100040933, LOC100040520, Armcx6, Armcx3, Armcx2, LOC637800, LOC100040987, Nxf2, B930008K04Rik, EG621246, LOC100040635, Tceal6, EG621322, Pramel3, EG621352
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337G06.T7 (MSMg01no337_g06.b1)MSMg01-337G06.TJ (MSMg01no337_g06.g1)
ACCAG452177AG452178
length738750
length of high quality
(start - end)		651 (45 - 695)514 (74 - 587)
definitionCHROMAT_FILE: MSMg01no337_g06.b1 PHD_FILE: MSMg01no337_g06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:45 2005CHROMAT_FILE: MSMg01no337_g06.g1 PHD_FILE: MSMg01no337_g06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,895,101 - 130,895,425)(130,700,972 - 130,701,485)
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACCTTATTGACCAAAATACCATTTTCACTTTTCCATATTGTTCAGT
CACCTCCATGCTCCCTGGATTCTCTGGAGTCCACTGTAATAAAGCAAGGC
TCACCTTTAAGTTTATTGATTTTTAATTAGTTTGGCTGGGCCTTTGTCAA
TTTTGTTTATCAATTCAGAGAATCAACATTTTGTTGCATTGATTTTTTTC
TATTGCTCTTTTAGTTTCTATTTATTTTTGTCCTAATTTTTATTATTTCT
TGCCATTTACTATGCTTCTATAATCTTGTACATCATTAGTTTGAGATCAC
TGTCTTTAAACTGCTGTTGAGGATTTTTTACAATACACATGAGTGTTTTG
CCTGAAAGTGTATATGTGCAGCACATGTGTCAGGTGCTTACAAAGGTTCC
CCTGGAACTCGAGTTACCAATGGGGGTAACCCACCACATTGCTGCTGGGA
ACAGAAGCTGGGTCCTCTGCAAAATCAGTAAGTGCTCTTAACCATTGACT
CATCGCTCCAGACCCTACTATGGTTTATTTAAAGTAAGTACCTATAGCTA
TATGCTTTCCCTCTAGAAATGCTCAGCTGTATACCAGAGGTTCCGGTAGG
TTATGCTATGATTTCATTTGGTTCTAGGAATTTTTAAGTTCCTAANATCC
ATATATTCAAAAGTATATTCTTTAGTCTCTGGGTATCG

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAAACACGGGTATGTTCACTCTACAAC
CTCACCCCTGGCATTTTACTTTTTTTTTTAATCCACTTAAAATGAGGGAA
AAATGTAGTTAAAGTGAACATCTAATTTAGCTTTGAAGAGAAAGAAGTGC
TCTCACAAAATGTAGCATGGATGGTGTTGCCAGGCAGCTGGCAACATTGC
CTGGTGGAGGGAAGAGAGGAGAAAGAACATAATGGATACTACTGATTTAT
AAAACAATAACTTTAAAATATAATTCACTTACCATATAATACAGCCATGT
AGAGTACACAGTTTAGCAGTCTCAGTCCAAAGCCTTTTTTATTCATTACA
ATAATCTAATTCCAGAACATTACTTCACTCCCCCAAAGAAGCCAATATCA
ATTAAACACCCATCCTACATTTACTTTTTCTTACATGAAGCAACTACTAA
TGTACTTTCCATCTCAATATATTTGCCTGTTCTAGGCAATATTCATCCAT
TTCTTTTACCAATAGTACTACACCACAGATTCAGTGAGTTATGCATAAAA
TGAATTTATTTTTGCTATTAGTTTTGATTGAAAGGAGATGGGTCATATCT
AATGATGGCTTCCTTGCTAGGAGTGTTTCCAGGGGTCCAGGTTATGCACT
GGTAGAAAACCGGGAGGGGGCCTTGTATTTGTGGGGCCCCCTTCCTAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_g06.b1 MSMg01no337_g06.b1 CHROMAT_FILE:
MSMg01no337_g06.b1 PHD_FILE: MSMg01no337_g06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:45 2005
         (651 letters)



>mm_chrX_130895101_130896151
          Length = 1051

 Score =  574 bits (297), Expect = e-168
 Identities = 318/325 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaccttattgaccaaaataccattttcacttttccatattgttcagtcacctcca 64
           ||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaattcaccttaaagacaaaaataccattttcacttttccatattgttcagtcacctcca 266

                                                                       
Query: 65  tgctccctggattctctggagtccactgtaataaagcaaggctcacctttaagtttattg 124
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 265 tgctccctggattctctggagtccactgtaataaagcaaggctcacctctaagtttattg 206

                                                                       
Query: 125 atttttaattagtttggctgggcctttgtcaattttgtttatcaattcagagaatcaaca 184
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 acttttaattagtttggctgggcctttgtcaattttgtttatcaattcagagaatcaaca 146

                                                                       
Query: 185 ttttgttgcattgatttttttctattgctcttttagtttctatttatttttgtcctaatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 ttttgttgcattgatttttttctattgctcttttagtttctatttatttttgtcctaatt 86

                                                                       
Query: 245 tttattatttcttgccatttactatgcttctataatcttgtacatcattagtttgagatc 304
           |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 85  tttattatttcttgccatttactatgcttctagaaacttgtacatcattagtttgagatc 26

                                    
Query: 305 actgtctttaaactgctgttgagga 329
           |||||||||||||||||||||||||
Sbjct: 25  actgtctttaaactgctgttgagga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space:   667281
Effective search space used:   667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no337_g06.g1 MSMg01no337_g06.g1 CHROMAT_FILE:
MSMg01no337_g06.g1 PHD_FILE: MSMg01no337_g06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:45 2005
         (514 letters)



>mm_chrX_130700772_130701685
          Length = 914

 Score =  986 bits (510), Expect = 0.0
 Identities = 513/514 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaacacgggtatgttcactctacaacctcacccctggcattttacttttttttttaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaacacgggtatgttcactctacaacctcacccctggcattttacttttttttttaatc 260

                                                                       
Query: 61  cacttaaaatgagggaaaaatgtagttaaagtgaacatctaatttagctttgaagagaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacttaaaatgagggaaaaatgtagttaaagtgaacatctaatttagctttgaagagaaa 320

                                                                       
Query: 121 gaagtgctctcacaaaatgtagcatggatggtgttgccaggcagctggcaacattgcctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagtgctctcacaaaatgtagcatggatggtgttgccaggcagctggcaacattgcctg 380

                                                                       
Query: 181 gtggagggaagagaggagaaagaacataatggatactactgatttataaaacaataactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtggagggaagagaggagaaagaacataatggatactactgatttataaaacaataactt 440

                                                                       
Query: 241 taaaatataattcacttaccatataatacagccatgtagagtacacagtttagcagtctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaaatataattcacttaccatataatacagccatgtagagtacacagtttagcagtctc 500

                                                                       
Query: 301 agtccaaagccttttttattcattacaataatctaattccagaacattacttcactcccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtccaaagccttttttattcattacaataatctaattccagaacattacttcactcccc 560

                                                                       
Query: 361 caaagaagccaatatcaattaaacacccatcctacatttactttttcttacatgaagcaa 420
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caaagaagccaatatcaattacacacccatcctacatttactttttcttacatgaagcaa 620

                                                                       
Query: 421 ctactaatgtactttccatctcaatatatttgcctgttctaggcaatattcatccatttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctactaatgtactttccatctcaatatatttgcctgttctaggcaatattcatccatttc 680

                                             
Query: 481 ttttaccaatagtactacaccacagattcagtga 514
           ||||||||||||||||||||||||||||||||||
Sbjct: 681 ttttaccaatagtactacaccacagattcagtga 714


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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