BAC Information

Click to search

BAC

Clone NameMSMg01-337H07
ChromosomeX (Build37)
Map Location 62,719,051 - 62,719,494
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040011, Ctag2
Downstream geneLOC671840
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337H07.T7 (MSMg01no337_h07.b1)MSMg01-337H07.TJ (MSMg01no337_h07.g1)
ACCAG452227AG452228
length742762
length of high quality
(start - end)
591 (45 - 635)444 (77 - 520)
definitionCHROMAT_FILE: MSMg01no337_h07.b1 PHD_FILE: MSMg01no337_h07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:50 2005CHROMAT_FILE: MSMg01no337_h07.g1 PHD_FILE: MSMg01no337_h07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTAGGCTTACGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAA
CTCAATCACAACAGAACTCACACAATATGTTCTCACTGATAAGTGGATAT
TAGCCCAGAAACTTAGGATACCCAAGATATAAGATACAATTTGCTAAACA
CATGAAACTCAAGAAGATGGAAGACCAAAGTGTGGACACTTTGCCCCTTC
TTAGAATTGGGAACAAAACCCTCATGGAAGGAGTTACAGAGACAAAATTG
GAGCTGAGACGAAAGGATGGACAATCTATAGACTGCCATACTCGGGGATC
CATGTCATAATCAGCTTCCAAACACTGACACCATTGCATACACTAGAAAG
ATTTTGCTAAAAGGACCCAAATAGAGCTGTCTCTTGTGAGACTATGCTAG
GACCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTATTAGATAGATC
TTAGGGCCCCCAATGGTGGAGCTAGATAAAGTACCCAAGGAGATAAAGGG
GTCTGCAACCATATAGTTGGAACAACAATATGAACTAACCAGTACCCCCC
TGGAGCTCATGTCTCTAGCTGCATATGAATCAGAANATGGCCTAGTTGGC
CATCAGTGGAAAGAGAGGCCCATTGGTTGTGCACACTTTATATGCCTCAG
TACAGCGGAACGACAGGGCCAAGAAGTGGGAGTGGTGGGTTG
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAACCTATTCAGAGCTGAGCTACA
AAGTAGATATGAAGAATATTCATATAGGACAATTGAGGACAGATGAAAGG
TCTAAAGATAAGTAAATCTTCAATCACATGCTTATCTATGCACAATTTGC
TGGAAATTAAAATGAATAAATATTCCCTTCCCCCTTATCCATGCTACTAT
TTGTATGTATTATTGCAGTTATCCTGTCTGGGGTCAGATGGAATCTGAAA
GAAGGTTTGGTTTAAATTTTCTGGACTCCCAGTGAAGGGATAAAAACACC
AGCTTGGAGTTTGTTTACATAGTGGATTATGTTGATGGATTTCCGTATAT
TAAACCATCCCTGCATCCCTGGAATGAAGCCTACTTGATGATGATGATGG
ATGATTGTTTTGATGTGTTCTTGGATTCGGTCAGCGAGAATTTTTTTGAG
TATTTTTGCATCGATATTCATAACGGGGAATTGGTCTGAAGTTCTCTTTC
TTTGTTGGATCTTTGTTACTGATGTGAATCATACCTGATATATATGGTAG
CTGATAGTGGACACAGGTGGAAAAACCCACGTACTAAAGCTTCCCGTTTT
GAATGTTAATCTGAACGGGGAAACCTTTCCCAATTTTTTAAATAAGCCCC
TTTTAATTCTAAAGGGGCTCCCTAAAAATGCCTCCTTTTGTTCCCTAAAT
AGTCGGGTATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_h07.g1 MSMg01no337_h07.g1 CHROMAT_FILE:
MSMg01no337_h07.g1 PHD_FILE: MSMg01no337_h07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:50 2005
         (444 letters)



>mm_chrX_62719019_62719862
          Length = 844

 Score =  859 bits (444), Expect = 0.0
 Identities = 444/444 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaacctattcagagctgagctacaaagtagatatgaagaatattcatataggacaattga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 aaacctattcagagctgagctacaaagtagatatgaagaatattcatataggacaattga 417

                                                                       
Query: 61  ggacagatgaaaggtctaaagataagtaaatcttcaatcacatgcttatctatgcacaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ggacagatgaaaggtctaaagataagtaaatcttcaatcacatgcttatctatgcacaat 357

                                                                       
Query: 121 ttgctggaaattaaaatgaataaatattcccttcccccttatccatgctactatttgtat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ttgctggaaattaaaatgaataaatattcccttcccccttatccatgctactatttgtat 297

                                                                       
Query: 181 gtattattgcagttatcctgtctggggtcagatggaatctgaaagaaggtttggtttaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 gtattattgcagttatcctgtctggggtcagatggaatctgaaagaaggtttggtttaaa 237

                                                                       
Query: 241 ttttctggactcccagtgaagggataaaaacaccagcttggagtttgtttacatagtgga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 ttttctggactcccagtgaagggataaaaacaccagcttggagtttgtttacatagtgga 177

                                                                       
Query: 301 ttatgttgatggatttccgtatattaaaccatccctgcatccctggaatgaagcctactt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 ttatgttgatggatttccgtatattaaaccatccctgcatccctggaatgaagcctactt 117

                                                                       
Query: 361 gatgatgatgatggatgattgttttgatgtgttcttggattcggtcagcgagaatttttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 gatgatgatgatggatgattgttttgatgtgttcttggattcggtcagcgagaatttttt 57

                                   
Query: 421 tgagtatttttgcatcgatattca 444
           ||||||||||||||||||||||||
Sbjct: 56  tgagtatttttgcatcgatattca 33


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space:   361956
Effective search space used:   361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)