CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTTACTATCATTTCGATCCAAACTGGAAACACCATTATTTAAAAC
ACTACCGCTTATATCTTTTGCCTTTCCAAAAGCTTAAAAAGGAGTAAGTT
GGGTATATTAAATTTATTATTTAAAGACATACAAGTAATACTGGGTGATG
GTGGCACTTGCCTTTAAAAACTCTGGAGGCAGAGATGGGGTTCTAGGACA
ACCAGGGTTACATCTGGAAACCCTGTCTTGAAAAACCAAAACACCAAAAC
CAAACCAAAACAAAAAAGTTTCTTCAAGAACTTACAGAGGCCTCAACACT
TGTTTTCCACTCATCTTTGCTCCCCCATGTTCTCTGCCTGCCTGGCAAGA
CTGTCTGCCTCCAAGGCTACTTCCAGTCTCTTCCTGGCTTTCTTTACCTT
CCAGATCTGACTCAGGATGTCTGCAATAGTTACTTCTTGGATGAAGTAAG
ATGGTGACAGATGAAGACGCACTGGCATTGTTACCCCTGGACTGGAGAAA
AATGGTGACAGCTGAAAAGCCATTTGTTCATTCTTTTCCAAGCATGGGGT
TTTGGACAGAGGTAACTTCTCCAGGAGTAAGCTGACCCTTAACACCACTT
TGGTCATTAGTTTCATCCCGCATTTCCAGTGCAATTCTTTCTACAGGGTT
TTGAAACTTTCATTGACATGACAGGTCCTGTTTATTCTCCTCCACTTG

CACCTTTTTTNNCCNNCNNNNNNNNNNNNNNNCCCCNNCNNNNNNNAAAN
NNCCAANNNNNNCCCCCNNCCCCCCCACCANNGGGGGGANCCCCCCAAAT
TAAAAATTTCCCCCCCNNNAACAACCCCCCCCCCNNCACCCCCGCCNCCC
CCNNNAAAAACCCCCCCCAAAAAANACCNNNNNNNNCCCCCCCCCNCCCC
CCGCCANNCACCCCCCCCCCCNNNAATGCNCCNCAAAACNNANACCCCCC
CCCCCCCCCATCCAAAACCCAAAACCCCAAAACAAAACCCNNCCACCANC
CCAGAGATGTTTTTGTTTTTTTTGTTCTTTTTGTGGGATGAAACATGACT
TNTTNGGANCNNNTCNNNATTGATTATGGGNNNNCCANNNNNNNNNNNNN
NTNNNNNNANNNNNNNNNTNNTTTTTTTTTTTTTTTTTAACTCCTGNAAA
AAAANAAAANNNNNNNNNNANNNNNNNNNNNNNNNNNNNNNNNNNNNNAA
NAAAGAAAAAGTATTTTGTTGTTGTTTTTGCCTTTNCCNNNNNNNNNNNN
NNATTTTTTTTTTTTTTTTTTTTTTCAGAAAAGGTAAAAGAAAATCTAGT
CTGGNNNNNNNNCNNCNNTNNNNNNNNNNNNNNNNNNNNNNNTTNTNNNN
NCNNNNNNNNNNNNNNNNCNNNNNNNNTTNNNNCNNTTTNNNNNNNTTTT
NNNNNNNNNNNNNCNNNNNNNNNNNCNCNNNNNTTTTTTTTTTTTTTTTT
TTTTTTTTG

Query= MSMg01no337_n06.b1 MSMg01no337_n06.b1 CHROMAT_FILE:
MSMg01no337_n06.b1 PHD_FILE: MSMg01no337_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:19 2005
         (575 letters)



>mm_chrX_48591503_48592477
          Length = 975

 Score =  596 bits (308), Expect = e-174
 Identities = 497/568 (87%), Gaps = 30/568 (5%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcttact--atcatttcgatccaaactggaaacaccattatttaaaacactacc 62
           ||||||||||| |  | |||||| |||||||||||||||||||||||||||||||| || 
Sbjct: 193 gaattctctta-tagaacatttctatccaaactggaaacaccattatttaaaacacgact 251

                                                                       
Query: 63  gcttatatcttttgcctttccaaaagcttaaaaaggagtaagttgggtatattaaattta 122
           |||||||| ||||||||||||||| |||||||||||||| |||||||| | |||||||| 
Sbjct: 252 gcttatat-ttttgcctttccaaacgcttaaaaaggagtgagttgggtttgttaaatttg 310

                                                                       
Query: 123 ttatttaaagacatacaagtaat-actgggtgatggtggcacttgcctttaa----aa-a 176
           ||||||||||||||||||||||| | ||||||||||||||||  ||||||||    || |
Sbjct: 311 ttatttaaagacatacaagtaatga-tgggtgatggtggcacacgcctttaaactcaaca 369

                                                                       
Query: 177 ctctggaggcagagatggggttctaggacaaccagggttacatctggaaaccctgtcttg 236
           |||||||||||||||  |||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 370 ctctggaggcagagacagggttccaggacaaccagggttacatatggaaaccctgtcttg 429

                                                                       
Query: 237 aaaaaccaaaac----ac-----caaaaccaaaccaaaa-caaaaa-agtttcttcaaga 285
           ||||||||||||    ||     |||||  |||| |||| |||||| |||| ||||||||
Sbjct: 430 aaaaaccaaaacaaaaacaaaaacaaaa--aaacaaaaaccaaaaatagttccttcaaga 487

                                                                       
Query: 286 acttacagaggcctcaacacttgttttccactcatctttgctcccccatgttctctgcct 345
           |||||||||||||||||||| |||||||  ||||||||| || ||||||||| |||| ||
Sbjct: 488 acttacagaggcctcaacacatgttttcttctcatcttttct-ccccatgttttctgtct 546

                                                                       
Query: 346 gcctggcaagactgtctgcctccaagg-ctacttccagtctcttcctggctttctttacc 404
           |||||||||| |||||||||||||||| || || |||||||||||||| |||||||||||
Sbjct: 547 gcctggcaagtctgtctgcctccaaggcct-ctgccagtctcttcctgtctttctttacc 605

                                                                       
Query: 405 ttccagatctgactcaggatgtctgcaatagttacttcttggatgaagtaagatggtgac 464
           |||||| |||| ||| |||| |||||||||||| ||||||| ||| ||||||||||||||
Sbjct: 606 ttccaggtctgtctccggatatctgcaatagtt-cttcttgtatgcagtaagatggtgac 664

                                                                       
Query: 465 agatgaagacgcactggcattgttacccctggactggagaaa-aatggtgacagctgaaa 523
           ||||||||| |||||||||||||||||||||||||||||||| || || ||||| |||| 
Sbjct: 665 agatgaagaggcactggcattgttacccctggactggagaaagaa-ggcgacagatgaag 723

                                       
Query: 524 agccatttgttcattcttttccaagcat 551
           || || ||| ||| ||||| ||||||||
Sbjct: 724 agacacttgctcagtctttcccaagcat 751


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space:   545225
Effective search space used:   545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)