XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CTCCCCTGCTTGGTTAGGGTTATTCCTTTGTACTTTATTGTTTGGAAGAT
TGTTGTGAATAAGATCTGCTTTTCTCCCGTTGTTCTCACCGGATTGATTA
TTGGTGTATAGAAAAGCTACTGATTTTTGAGTATTGACTTTATATTCTGC
TATTTTTTCTGACTTTATCAGCTCTAAAAGTCTTTTGTTGTAATATTTAG
GATAGTCTAAATATAGGTTATTGTCTATGAAGTCAAAATGTGACATCTCT
TCATTTAATTTTCTTGTCTGTAAGAGCAGTGTGGTTTGTTAATTGCTGAG
CCACTGTCTCCAGCCCCCTCCTTTCTTTAGTGCTGTTTGAACATACGAAT
TTCTCAGTCTTGCCTTAGATCACTGCCATGTTTCTTTCATTTGGGCATAG
TACTAATACACTATGACGATGCTCTCCATGGACTTTTTTGCTTGTTTGTT
TGCTTGGTGGTGTTTGGTTTTTCAAGTCAGTGTTTCTTATCTATTAAATT
TTTAATTTGAATTTTATTGAGCTTTTTTTAATCTCTGAGATTTTTGTTTG
GGTTTTATTTTTTAGAATCTCTGTCTCTTTACCAAATATCTCATCCAAGT
TGTTAAATTTCTTGTCCACATTTTGAATTGAATTCTTCCCTTCATTTATC
TGCTCATTTTGATCCTCTTTGATATTGCGTATAACTTTTAA

ATGATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACAACTGAGGAATCTCACGTGGCTGAGA
AGCACCTAAAGAAATGTTTAAAGTCCTTATTGATCAGAGAAATGCAAATC
AAAATGACCCTGATATTCCACTTACACCAATCAGAATGGAGAAGATCAAA
ACCTCAGGTGACAACACATGCTGGTGAGGATATGGAGAAAGAGAAACACT
CCTCCATTGCTGGTGGGATTGCAAACTAGAACAACCACTCTGGAAATCAA
TCTGGAGGTTCCTCAGAAAATTGGAAATAGATCTACCTGAAGACCCAGCT
ATAGAACTCTTGGGAATATACCCAAAAGATGCCGCAACATGCCACAGGGG
CACATATTCCACTATGTTCATAGTGGCCTTATTTGTGATAGCCAGAGCTG
GAAACAACCTAGATGTCCCTCAACTAAAGAATGGATACAGAAAATGTGGT
TCATTTACACAACGGAATACTACTCAGCTATTAAAAAAAGAAAAAAAAAA
AGGACATCCTGACTTTTGAAGGCAAATGGATGGAACTAGAAAATATCATC
CTGAGTGAGGTAACTCAGACCCCAAAGGACATGCATGGTATGTACTCACT
AATAAATGGATATTAGCAAAAGGGAAAAAAAGTACAGACTACCCCAGATA
CAATGCGCAGAAATCAAAAAGGTCGACAAGC

Query= MSMg01no338_b18.b1 MSMg01no338_b18.b1 CHROMAT_FILE:
MSMg01no338_b18.b1 PHD_FILE: MSMg01no338_b18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:40 2005
         (682 letters)



>mm_chrX_45951534_45952615
          Length = 1082

 Score = 1290 bits (667), Expect = 0.0
 Identities = 676/679 (99%), Gaps = 2/679 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctcccctgcttggttagggttattcctttgtactttattgtttggaagattgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctcccctgcttggttagggttattcctttgtactttattgtttggaagattgt 264

                                                                       
Query: 65  tgtgaataagatctgcttttctcccgttgttctcaccggattgattattggtgtatagaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtgaataagatctgcttttctcccgttgttctcaccggattgattattggtgtatagaa 324

                                                                       
Query: 125 aagctactgatttttgagtattgactttatattctgctattttttctgactttatcagct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagctactgatttttgagtattgactttatattctgctattttttctgactttatcagct 384

                                                                       
Query: 185 ctaaaagtcttttgttgtaatatttaggatagtctaaatataggttattgtctatgaagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctaaaagtcttttgttgtaatatttaggatagtctaaatataggttattgtctatgaagt 444

                                                                       
Query: 245 caaaatgtgacatctcttcatttaattttcttgtctgtaagagcagtgtggtttgttaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caaaatgtgacatctcttcatttaattttcttgtctgtaagagcagtgtggtttgttaat 504

                                                                       
Query: 305 tgctgagccactgtctccagccccctcctttctttagtgctgtttgaacatacgaatttc 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 505 tgctgagccactgtctccagccccctcctttctttagtgctgtttgaacatatgaatttc 564

                                                                       
Query: 365 tcagtcttgccttagatcactgccatgtttctttcatttgggcatagtactaatacacta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcagtcttgccttagatcactgccatgtttctttcatttgggcatagtactaatacacta 624

                                                                       
Query: 425 tgacgatgctctccatggacttttttgcttgtttgtttgcttggtggtgtttggtttttc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgacgatgctctccatggacttttttgcttgtttgtttgcttggtggtgtttggtttttc 684

                                                                       
Query: 485 aagtcagtgtttcttatctattaaatttttaatttgaattttattgagctttttttaatc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aagtcagtgtttcttatctattaaatttttaatttgaattttattgagctttttttaatc 744

                                                                       
Query: 545 tctgagatttttgtttgggttttattttttagaatctctgtctctttaccaaatatctca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tctgagatttttgtttgggttttattttttagaatctctgtctctttaccaaatatctca 804

                                                                       
Query: 605 tccaagttgttaaatttcttgtccacattttgaattgaattcttcccttcatttatctgc 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tccaagttgttaaatttcttgtccacattttgaattgaattcttcccttcatttatctgc 864

                              
Query: 665 tcattttga-tcctctttg 682
           |||||| || |||||||||
Sbjct: 865 tcattt-gaatcctctttg 882


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space:   720384
Effective search space used:   720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)