Query= MSMg01no338_j16.b1 MSMg01no338_j16.b1 CHROMAT_FILE:
MSMg01no338_j16.b1 PHD_FILE: MSMg01no338_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:16 2005
(587 letters)
>mm_chrX_83453340_83454326
Length = 987
Score = 1065 bits (551), Expect = 0.0
Identities = 574/587 (97%), Gaps = 11/587 (1%)
Strand = Plus / Plus
Query: 1 gtgggaaggcatggctgagcagcatcattcctaaaagagaaagagtagagtagaaactcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgggaaggcatggctgagcagcatcattcctaaaagagaaagagtagagtagaaactcc 260
Query: 61 tcatatagctgaggacagtatgcaccgaaagcagagtgaaaccaggggtgggtatgacct 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 tcatatagctgaggacagtatgcaccaaaagcagagtgaaaccaggggtgggtatgacct 320
Query: 121 ttcaagacccagtctcccaaaggctcaagagccttccaattagtacagcaggccggttgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcaagacccagtctcccaaaggctcaagagccttccaattagtacagcaggccggttgg 380
Query: 181 gaattggaagtctaaaacagaagcctgttgagaacatttcccatccaaactacaatggaa 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 gaattggaagtctaaaacagaagcctgttgagaacatttcccatccaaactacaatggga 440
Query: 241 tgagaagttagattcaccatatatgtgaagatgccagttatgactttcctctccatcttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgagaagttagattcaccatatatgtgaagatgccagttatgactttcctctccatcttt 500
Query: 301 tcattttcttgtcatctgagaagtgtaattgccacaatgctgattgcaaccagagaaatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcattttcttgtcatctgagaagtgtaattgccacaatgctgattgcaaccagagaaatc 560
Query: 361 tcttaagtgagcactacagaacctagtcctttgcttttttttatttatttatttactttt 420
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 561 tcttaagtgagcactacagaacctagtccttt--tttttttt-----tttatttactttt 613
Query: 421 attttgtgtatgggagttttgactccgtgcctgtgtatcacatgcttgcaatgcagtggg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 attttgtgtatgggagttttgactccgtgcctgtgtatcacatgcttgcaatgcagtggg 673
Query: 481 aggccaaaagagagggacagatgccctgtaactgaaattagagatgtcctataggcatta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 aggccaaaagagagggacagatgccctgtaactgaaattagagatgtcctataggcatta 733
Query: 541 tttggatgctaggaattgaacaaaactccttcctctgcaagagcaac 587
|||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 734 tttggatgctaggaattgaacaaaactcct----ctgcaagagcaac 776
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space: 563729
Effective search space used: 563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no338_j16.g1 MSMg01no338_j16.g1 CHROMAT_FILE:
MSMg01no338_j16.g1 PHD_FILE: MSMg01no338_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:16 2005
(613 letters)
>mm_chrX_83574713_83575719
Length = 1007
Score = 1120 bits (579), Expect = 0.0
Identities = 602/613 (98%), Gaps = 6/613 (0%)
Strand = Plus / Minus
Query: 1 catgactggaatgtccctcatttgtgcctggaaagtcacagaatgcagcataagtagata 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 catgactggaatgtccctcatttgtgcctggaaagtcacagaatgcagcataagtagatt 748
Query: 61 caatggatgggctaccagttcagcaatggagtgtcctggtcaaaatcagttgagagactc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 caatggatgggctaccagttcagcaatggagtgtcctggtcaaaatcagttgagagactc 688
Query: 121 tgagtggtgattaaaggaaatatctctcaaataggtagtctcagagagttctctatcgcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 tgagtggtgattaaaggaaatatctctcaaataggtagtctcagagagttctctatcgcc 628
Query: 181 tgtaacatctgagaaactataggagccattgaagcttgaaatgattacttcaaaggtgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tgtaacatctgagaaactataggagccattgaagcttgaaatgattacttcaaaggtgag 568
Query: 241 tgaagaaggtctaggtttcattcaaagtttgtgttacttatgtcagaacatcacagagat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tgaagaaggtctaggtttcattcaaagtttgtgttacttatgtcagaacatcacagagat 508
Query: 301 cctgacgccacttgatatgctaaggacctaaaaagcaaggattctgtaatagtgacattc 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 507 cctgacgccacttgatatgctaaggacctaaaaagcaaggattctgcaatagtgacattc 448
Query: 361 cttagcaacacaccccagtaatgagagactccaggcaatagtagcaggatataggtcatc 420
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cttagcaacacaccccagtattgagagactccaggcaatagtagcaggatataggtcatc 388
Query: 421 ctcattccccttgtgatgggaagaaagccttggaagaaagacttgagtcagcatctgtcg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ctcattccccttgtgatgggaagaaagccttggaagaaagacttgagtcagcatctgtcg 328
Query: 481 aatcaattgaatgtgaatttctaaaagtcatctgggtttaagtttaagaccctgaatttg 540
||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 327 aatcaattgaatgtgaatttctaaaagtcatctgg------gtttaagaccctgaatttg 274
Query: 541 gtttaaggagagcatttgcagtctcacaatctacagggtcccactaaatctatcccctag 600
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 273 gattaaggagagcatttgcagtctcgcaatctacagggtcccactaaatctatcccctag 214
Query: 601 gggatttccttag 613
|||||||||||||
Sbjct: 213 gggatttccttag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1007
Length adjustment: 10
Effective length of query: 603
Effective length of database: 997
Effective search space: 601191
Effective search space used: 601191
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
