BAC Information

Click to search

BAC

Clone NameMSMg01-338M01
ChromosomeX (Build37)
Map Location 157,411,243 - 157,411,712
singlet/doubletsinglet
Overlap genenone
Upstream geneSh3kbp1, LOC667524, Pdha1, LOC100041403, LOC100041416, LOC100041427, Gpr64, Phka2, Ppef1, Rs1, Gja6
Downstream geneScml2, LOC414364, Prkaca-ps1, Rai2, Gm47, Nhs
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-338M01.T7 (MSMg01no338_m01.b1)MSMg01-338M01.TJ (MSMg01no338_m01.g1)
ACCAG453206AG453207
length749741
length of high quality
(start - end)
483 (26 - 508)309 (72 - 380)
definitionCHROMAT_FILE: MSMg01no338_m01.b1 PHD_FILE: MSMg01no338_m01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:27 2005CHROMAT_FILE: MSMg01no338_m01.g1 PHD_FILE: MSMg01no338_m01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGACTCCTATAGGTACAGGATCCGCGGAATTCAGATGGTATTTGTCGACG
ATCTTGCAGCCTTTTGGTCACTTTTGAGACTTGTTACTCGTTGCCAGTGA
GAAGTATAAGTCAGGTTTTTAAGAGGAGGAGTCTCTCTCTCTCTCTCTCT
CTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTCTCTCTCTCGGT
CTCTCTCTCTTTCATTGCCTAGTACTTTGGTCTCTTTTTCTTGGCACAGT
CTTGGACTGATGTGTGGAGAAATTCTTTTTCACCGATCTGTGTACTTATG
GTTTTTTACGTCCAGTTTCTTCCCATGCAGACCTGAAACATTTTCAGCTT
CTTGACTTTATAGTCATTTGAGTTGCAGTTCTTGGTTTAGGAGGTAGAAA
GGAGCAGGTCTTTGTCCTGTGGTACATTGTGTAGAATATACTGTCTGTAT
TTTTATCACTTGCTCCGATTATTATTTTCTTCCCGTGCCATCAAGTAGTT
CAGCCAGTTAAAAACCAGGAAGAAGATACAACTATAGACATTTTTTACTT
TGCACTGGTTATATGATTGTTTAAATATAGCTCATAGCATCTAATAGGAA
TTTTTTATTTTTTAAAGGGCTTTTTTAAATTTTCCCAAATTGTAAAACTT
TAAGAGTCTGTTCTTTTCCACTATTATGGGATCAAATTCATAGAATTTTT
TTTTTCTTTTTGCCAACTCTCAATCGATAATTTAAGAATAACTTTCTGG
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCCCGGAATATGGTTATATATAGCTCAGT
GATCTCATGTAGCTTAGGCTGGCTGGAAGCTAGTTTTGAGCTCACTATGA
AGCAAAGGATGACCCTGAACTTCTTGGTTTTCCTGCTTTCATCTTCCAAG
TGCTGCGATTACAAGAATGAATGCTGCCATGTCTAGTTCATGTGGTGCTA
GGGATCAACCCTGAGGCTTTGTGCATGTTAAGACAAGCACTCTACTAACT
GAGCTCTAGCTCTAGCCCTGACCCTGACTCAAAAGAATAGGGGGGAGGAA
GGAAGGAAGGAAGGAAGGGAGGAAGGGAGGGAGGTTTTNTTTTTTTTTTT
TTTTTNNTTTTTTTTTTTTTTTTTTTTTTTGTTTGTTTGGGTGTTGTTTT
TTTTGTTTTGTGTTGTTTTTTTTTTTTTGTTTTTTGTGTTTTTGTGTTTT
TGTTGGTGGTTTGTTTTTGTTGTTTTTTTTTTGTTTTTTTTTTTTTTTGT
TGGTTTTTTGTTTCTGGTTTTTGTGTTTTTGTGTTGTGTTTTGGTTGTGT
TTGTTTGTTTTTTTGTTTTTTTTTTTTTTTTGTGTGTGTTTTTTTTTTTT
TTTGTGTTTTGGTGTGTTTTTGTTGTTTTTTTGTGGTGTTGTGTGGTTTT
TTTTTGGTTTTTGTTATTTCTGTTTTCTTTTTTTTTGTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no338_m01.b1 MSMg01no338_m01.b1 CHROMAT_FILE:
MSMg01no338_m01.b1 PHD_FILE: MSMg01no338_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:27 2005
         (483 letters)



>mm_chrX_157410855_157411737
          Length = 883

 Score =  785 bits (406), Expect = 0.0
 Identities = 459/482 (95%), Gaps = 12/482 (2%)
 Strand = Plus / Minus

                                                                       
Query: 2   gaattcagatggtatttgtcgacgatcttgcagccttttggtcacttttgagacttgtta 61
           ||||||||||||||| ||  ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 858 gaattcagatggtatctgaagaccatcttgcagccttttggtcacttttgagacttgtta 799

                                                                       
Query: 62  ctcgttgccagtgagaagtataagtcaggtttttaagaggaggagtctctctctctctct 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 ctcgttgccagtgagaagtataagtcaggtttttaagaggaggagtctctctctctctct 739

                                                                       
Query: 122 ctctctcgctctctctctctctctctctctctctctctcgctctctctctcggtctctct 181
           ||||     ||||||||||||||||||||||||||||||     | ||| |  |||||||
Sbjct: 738 ctct----atctctctctctctctctctctctctctctc-----c-ctcac--tctctct 691

                                                                       
Query: 182 ctctttcattgcctagtactttggtctctttttcttggcacagtcttggactgatgtgtg 241
           ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 690 ctctttcattgcctagtgctttggtcactttttcttggcacagtcttggactgatgtgtg 631

                                                                       
Query: 242 gagaaattctttttcaccgatctgtgtacttatggttttttacgtccagtttcttcccat 301
           ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 630 gagaaattctttttcaccgatctgtgtacttatggtggtttacgtccagtttcttcccat 571

                                                                       
Query: 302 gcagacctgaaacattttcagcttcttgactttatagtcatttgagttgcagttcttggt 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 gcagacctgaaacattttcagcttcttgactttatagtcatttgagttgcagttcttggt 511

                                                                       
Query: 362 ttaggaggtagaaaggagcaggtctttgtcctgtggtacattgtgtagaatatactgtct 421
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 510 ttaggaggtagaaaggagcaggtctttgtcctgtggtacattgtgtagaatatagtgtct 451

                                                                       
Query: 422 gtatttttatcacttgctccgattattattttcttcccgtgccatcaagtagttcagcca 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gtatttttatcacttgctccgattattattttcttcccgtgccatcaagtagttcagcca 391

             
Query: 482 gt 483
           ||
Sbjct: 390 gt 389


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)