BAC Information

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BAC

Clone NameMSMg01-339A20
ChromosomeX (Build37)
Map Location 141,868,630 - 141,869,077
singlet/doubletsinglet
Overlap genenone
Upstream geneTrpc5, LOC100039436, Zcchc16, LOC666655, LOC623591, Lhfpl1
Downstream geneAmot, EG434860, LOC100039313, LOC623697, LOC623731, LOC237096, LOC100039558
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-339A20.T7 (MSMg01no339_a20.b1)MSMg01-339A20.TJ (MSMg01no339_a20.g1)
ACCAG453433AG453434
length972755
length of high quality
(start - end)		---448 (67 - 514)
definitionCHROMAT_FILE: MSMg01no339_a20.b1 PHD_FILE: MSMg01no339_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:49 2005CHROMAT_FILE: MSMg01no339_a20.g1 PHD_FILE: MSMg01no339_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCNNCCCGCAAAAAACGAACTCCNCTAATTTCCNAAANGNATNCNCNG
NNATTTCTCACTTTTTTCTCAACTAAACAGTTTCNAAAAAATGTAATAAA
AGGGGAAAAGGAATGGGACTTATCTAATTAAAAATAAAAAAAAAAGAAAA
AAAGACACGGAGNGCTAAAAAAAATAAGGAGTGGTGAAGAGGGAGAGAGT
AGGGATAGAGGTGTGTGTTGGGTTTTGTGGTGAAAGGGGTAGAGTGGTAG
TAGAGAGTAAGAGTAGGGGTGACTGGGGTGAAAGAAAGGATAGAATTTNT
TTTTTNTTTTNNAAAAACCCTTTTGTTGGAAAAAATAAAAAAAAAAAGGA
AAACTTTTTTTTTCTTTTCAACACAAACNAAAAAAAATTTTTTCTTTCCC
TCCCCCCCGCGCCCAAACACCCCCCACAAAAAAAAAAAACCCCCCCCCCC
CCCCGCGTTTTTTTTTTTTTTTTTTTTATTTTTTTTTCTTTTCCCACAAA
AAAAACACCCCCTTTATTTATTTAAAAAACAAAAAAANNNNTNTAATAAA
TCTCTTCTTTAGCGCGCCTCTTTCTCTCTTTTGTTTTTTTATAAAAAAAA
AAAAAAAAAAAAAAAAAATCTTCTCTTCTTTCTTTTTTATTTTTTNNNNN
NNNNNNNNNCCNCCCCCCCCCACCACCCCNCAAAAAAAAAAAAAAACATC
CCCCCCCCCTTCCATATCCCCTCNTATTTCCTTTTTTTTTTTTTTTGTTT
ATNNCNTATTTTTTCTCATTTCCCCCCCTNNCCCCCCCCNCCCCNTCCCC
CCACCCTCCNCCACTCTCTCNNNNCCNACCCACACACCCTCTCTCTTCCT
CCCTCCTCTTCCTTTCTCCCCCCTTCTCCTTCCCCCCTTTTCTCTTCTTT
TTTCCCTTTTTTTNTTTCTTTTCCTTTCTCCCCCCCCCTTCTTTCCTACT
TTATTTATTTATTATATTTTTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAGCCATTTATAAGCAACCTACCACAAACCCCAAT
TAGTTTGGAAACTGGGGCAGGGAAGAATCCTTTGGGTGCACCAATCTGTC
CCTCAGACGGAAGAGAATAGAGACTGAGACAGGGAAGATGAGGGCAACTG
ATGATGACAGTTTCATTCAAGTACTTGAGATGCTGCCTAGTAAACATCCT
TAGTCTGAAGCTATAATGTAGGAGAGAAACAAAGGAGAGGGATATATCTA
CAGTTTGAGAATGAATTTTCTAACAGAACATAAAATGATTTAGCTAGAGT
GGGATTATATATTTATCATTATAGTCCTGAGGCCAAATAATTATTTATTA
GGCATTCCTTATAGCACATTATTTATTAGCCACAGGACACCTTCTTTTAG
TGAAGGAAAACATGAGATTTATTTTATACCCTGAGGGGGCAGTAATAAGT
GCCTTGAAATTCTGAGGGAATGTATATTGTTGACATGAGCAAAGCCATGG
CAAGGAACAAGGTCCCAGACCCATGGAAAAATTGGCAAAGCCTTTCCCAT
ATGGGCCCATTCTGGTCAAGAATGTCAAAGCTTTCTTCCTCTGGTTCAAG
TACCAAGGATTTAGGGTGATTGATGGGGGGGGGGGAAAAATAGAAAATGC
AATTTTCCTCCCCAAAAAGTTTATATCCCAAAATACTCCCCTTCCAAAAC
CTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no339_a20.g1 MSMg01no339_a20.g1 CHROMAT_FILE:
MSMg01no339_a20.g1 PHD_FILE: MSMg01no339_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:49 2005
         (448 letters)



>mm_chrX_141868430_141869277
          Length = 848

 Score =  828 bits (428), Expect = 0.0
 Identities = 443/448 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agccatttataagcaacctaccacaaaccccaattagtttggaaactggggcagggaaga 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 agccatttataagcatcctaccacaaaccccaattagtttggaaactggggcagggaaga 589

                                                                       
Query: 61  atcctttgggtgcaccaatctgtccctcagacggaagagaatagagactgagacagggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 atcctttgggtgcaccaatctgtccctcagacggaagagaatagagactgagacagggaa 529

                                                                       
Query: 121 gatgagggcaactgatgatgacagtttcattcaagtacttgagatgctgcctagtaaaca 180
           |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 528 gatgagggcagctgatgatgacagtttcattcaagtacttgagatgctacctagtaaaca 469

                                                                       
Query: 181 tccttagtctgaagctataatgtaggagagaaacaaaggagagggatatatctacagttt 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 468 tccttagtctgaagctataatgtaggagagaaataaaggagagggatatatctacagttt 409

                                                                       
Query: 241 gagaatgaattttctaacagaacataaaatgatttagctagagtgggattatatatttat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gagaatgaattttctaacagaacataaaatgatttagctagagtgggattatatatttat 349

                                                                       
Query: 301 cattatagtcctgaggccaaataattatttattaggcattccttatagcacattatttat 360
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 348 cattatagtcctgaggccaaataattatttattaggcattctttatagcacattatttat 289

                                                                       
Query: 361 tagccacaggacaccttcttttagtgaaggaaaacatgagatttattttataccctgagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tagccacaggacaccttcttttagtgaaggaaaacatgagatttattttataccctgagg 229

                                       
Query: 421 gggcagtaataagtgccttgaaattctg 448
           ||||||||||||||||||||||||||||
Sbjct: 228 gggcagtaataagtgccttgaaattctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space:   367044
Effective search space used:   367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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