CGCGTTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCACATGACTACATTCCTGACACTTGTCTTAATAGATTTTA
AGAAAGGGTTTTGAGTGCTTACAAGATACCAATTAATTTGTAGAACTATA
GTCTCTCCTCAACTTGTGTCTTGTTTTTTATCTTTGCTTTATTTGGAGAC
TATATTGCCCGTCATAGTTACACTTAGAAAAGGACATAGTGCAACCCTTG
ACACTGAAAATGAGAATAGAAATATGATCCTGCCTTCAGACTTAGGTGCA
TGAGAACATCATGATTTCTGTTCCATTCAACAGTTAATATGGAATATGGA
GCCATGTGTTTTATGTAGCCTGGAGATATGGACCATCTGAAATAAGAGAA
CCACCATTAAGCTTACTTGTATATAAAAGAACATTGGATATATGTTCTTT
CATGTTTCATAGTTTTCACATCACTTATTTTATTTTATTTTATTTTTATA
TTTTTGGAATGGTGCCCATCATGGGTGTCAATGGTTTTTATTTTAATTTT
TTTCCATTTTTTCCATTTTTTATTAGGTATTTAGCTCATTTACATTTCCA
ATGCTATACCAAAAGTCCCCCATACCCACCCACCCCAACTCCCCTACCCA
CCCACTCCCCCTTTTTTGGCCTGGCATTCCCCTGTACTGGGGCATATAAA
GTTTGCGGGCCCAATGGGCCTCCCTTTCCCGGGAAGGCCA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCTGATCTTTCCAGAACTTTTATCATGAATGGGTGTTGGATCTT
GTCAAATGCTTTTTCTGCATCCAACGAGATGATCATGTGGTTTTTTCTTT
GAGTTTGTTTATATAGTGGATTACATTGATGGATTTTCGTATATTAAACC
ATCCCTGCATTCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCT
TTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGC
ATCGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGAT
CTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGAGTTG
GGTAGAGTACTTTCTACTTCTATCTTGTGAAAAAGTTTGTGCAGAACTGG
AATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCGTCTG
GTCCTGGGCTTTTTTTGGCTGGGAGACTATTTATAACTGCTTCTATTTCT
TTAGGGGATATGGGACTGTTTAGAAGGTCAACTTGATCCTGATTCACTTT
TGGGACCTGGTATCTGTCCAGAAATTTGTCCATTTCGTCCAGGTTTTCAG
TTTTTGTGAAAATAACCTTTTTGAAAAAGTTCTGAAGGTGGTTTTGATTT
TTTTCAGATCTGTTTG

Query= MSMg01no339_k04.b1 MSMg01no339_k04.b1 CHROMAT_FILE:
MSMg01no339_k04.b1 PHD_FILE: MSMg01no339_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:31 2005
         (615 letters)



>mm_chrX_86575630_86576644
          Length = 1015

 Score = 1108 bits (573), Expect = 0.0
 Identities = 606/625 (96%), Gaps = 15/625 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcacatgactacattcctgacacttgtcttaatagattttaagaaagggttttg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gaattctcacatgactacattcctgacacttgtcttaatagattttaagaaagggttttg 566

                                                                       
Query: 65  agtgcttacaagataccaattaatttgtagaactatagtctctcctcaacttgtgtcttg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agtgcttacaagataccaattaatttgtagaactatagtctctcctcaacttgtgtcttg 506

                                                                       
Query: 125 ttttttatctttgctttatttggagactatattgcccgtcatagttacacttagaaaagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttttttatctttgctttatttggagactatattgcccgtcatagttacacttagaaaagg 446

                                                                       
Query: 185 acatagtgcaacccttgacactgaaaatgagaatagaaatatgatcctgccttcagactt 244
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 445 acatagtgcaacccttgacactgaaaatgagaacagaaatatgatcctgccttcagactt 386

                                                                       
Query: 245 aggtgcatgagaacatcatgatttctgttccattcaacagttaatatggaatatggagcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aggtgcatgagaacatcatgatttctgttccattcaacagttaatatggaatatggagcc 326

                                                                       
Query: 305 atgtgttttatgtagcctggagatatggaccatctgaaataagagaaccaccattaagct 364
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 325 atgtgttttatgtagcctggagatatggaccacctgaaataagagaaccaccattaagct 266

                                                                       
Query: 365 tacttgtatataaaagaacattggatatatgttctttcatgtttcatagttttcacatca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tacttgtatataaaagaacattggatatatgttctttcatgtttcatagttttcacatca 206

                                                                       
Query: 425 cttattttattttattttat---------tttta---tatt---tttggaatggtgccca 469
           ||||||||||||||||||||         |||||   ||||   ||||||||||||||||
Sbjct: 205 cttattttattttattttattttattttattttattttattttatttggaatggtgccca 146

                                                                       
Query: 470 tcatgggtgtcaatggtttttattttaatttttttccattttttccattttttattaggt 529
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 145 tcatgggtgtcaatggtttttattttattttttttccattttttccattttttattaggt 86

                                                                       
Query: 530 atttagctcatttacatttccaatgctataccaaaagtcccccatacccacccaccccaa 589
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 85  atttagctcatttacatttccaatgctataccaaaagtcccccatacccacccaccccca 26

                                    
Query: 590 ctcccctacccacccactccccctt 614
           |||||||||||||||||||||||||
Sbjct: 25  ctcccctacccacccactccccctt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space:   608025
Effective search space used:   608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)