BAC Information

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BAC

Clone NameMSMg01-340B08
ChromosomeX (Build37)
Map Location 116,438,504 - 116,438,827
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039551, Tgifx1, LOC665087
Downstream geneLOC385417, Pabpc5, LOC236983, LOC674318, EG545741, LOC100039461, Pcdh11x, H2afb3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-340B08.T7 (MSMg01no340_b08.b1)MSMg01-340B08.TJ (MSMg01no340_b08.g1)
ACCAG454209AG454210
length744742
length of high quality
(start - end)		663 (44 - 706)594 (74 - 667)
definitionCHROMAT_FILE: MSMg01no340_b08.b1 PHD_FILE: MSMg01no340_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:03 2005CHROMAT_FILE: MSMg01no340_b08.g1 PHD_FILE: MSMg01no340_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGA
ATTCAGCCTGTGTGTAACCCTGAGCTGGTTCTTCCATTTTGGCCTCTGCT
GTACTGTAATCTTGGGAGAAGCCCCAACATCTGTTTTTAAACTTTTGCTT
TAAATGTAGTAGGGGCTTCTTTTAAAAGCCTCCTGCCAGAACTCAACAAA
TGTAGATGTGGATGCCCACAAGCGTCCATTGGACTGAGCTCGGGGTCCCC
AATAGAGGAGTTAGAGAAAGGACTGAAGGAGCTGAGGAGGTTTGCAACCC
CATAAGAAGAATGACAATATCAACAAACCAGACACCCCCACCCCGGCCAG
AGCTCTCAGGGACTAAAACACCAACCAAAGAGTACACATGGAGGGGCCCA
AGGTTCCAGCTGCATATGTAGCAGAATATGGACTTGTCTGGTATCAATGG
GAGGAGAGGACCATCGTCCTTTCTAGGATTGATGCCCCAGTTTAGGGGAA
TGCCAGGAGAGGGAAGTAGGAATGGGTTGATGGGTGTAGGAGCACCCTCA
TAGAAGCCGAGGGAGGCAGGATGGGATAGGGAGTTTCCAGGCGGGGGGAC
TGGGAAAAGTGATAACATTCGAAATGTAAATAAAGAAAATATCCAATAAT
ATTAATTAAAAAAGAACCGTTCCATACTATCTCTCTGAAATTTCTACTCC
TTGCTTAAGAAACTTCCTTCCCAGGTGTTCGNTTTGTGTTGGCC

CAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCCTGTCCGGGGGCATAATCTTTCCTA
GACCAAGGGCCTCTCTTCCCATTGATGGCTGACTAGGCCATCCTCTGCTA
GTTATTCAACTAGAGACACAGCTCTGGGGGTTACTGGTTAGTTCATATTG
TTGTTCTTCCTATAGGGTTGCAGACCCCTTTAACTCTTTGGATACTTTCT
CTAGCTCCTTCATTAGGAACCCTGTGTTCCATCCAATAGATGACTGTGAG
CCTCCACTTCTGTATTTGCCAGGCACTGGCACAGCCTCACAAGAGAGAGC
TATGTTAGGGGACTGTCAGCAAAATCTTGCTGGCTATGCAATAGTGTCTG
GGTTTGGTGGCTGACTATGGGATGGACCCCCAGGTGGGACAGTCGCTGGA
TGGTCCTTCCTTCTATCTCAGCTCTGAACTTTGACTCTGTAACTCCTTCC
ATGGGTATTTTCTTCCCTATTCTAAGAAGGAGCAAGGTATCCACACTTTG
GTCTTCTTTCTTCTTGAGTTTCATGTGTTTTGCCAATTGTATCAGTCTGG
CAGTTCCTCAGAAAATTGCATATAGTACTAGAGGAAGATCCAGCAATTCC
TCTCCTGGGCATATACCCAGAAGATATTCCAACTGTAATAAGGACACATG
CTCCACTATGTTCATATCAGCCTTATTTTTATTAGCCAGTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no340_b08.b1 MSMg01no340_b08.b1 CHROMAT_FILE:
MSMg01no340_b08.b1 PHD_FILE: MSMg01no340_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:03 2005
         (663 letters)



>mm_chrX_116438504_116439566
          Length = 1063

 Score =  565 bits (292), Expect = e-165
 Identities = 316/324 (97%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcagcctgtgtgtaaccctgagctggttcttccattttggcctctgctgtactgta 65
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 324 gaattcagcctgtgtgtaaccctgagcttgttcttccattttggcctctgctgtactgta 265

                                                                       
Query: 66  atcttgggagaagccccaacatctgtttttaaacttttgctttaaatgtagtaggggctt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atcttgggagaagccccaacatctgtttttaaacttttgctttaaatgtagtaggggctt 205

                                                                       
Query: 126 cttttaaaagcctcctgccagaactcaacaaatgtagatgtggatgcccacaagcgtcca 185
           |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 204 cttttaaaagcctcctgccagaactcaacaaatgtagatgcggatgctcacaagcgtcca 145

                                                                       
Query: 186 ttggactgagctcggggtccccaatagaggagttagagaaaggactgaaggagctgagga 245
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 ttggactgtgctcggggtccccaatagaggagttagagaaaggactgaaggagctgagga 85

                                                                       
Query: 246 ggtttgcaaccccataagaagaatgacaatatcaacaaaccagacacccccaccccggcc 305
           ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
Sbjct: 84  ggtttgcaaccccataagaagaatgacaatatcaacaaaccagaccccccccccccgggc 25

                                   
Query: 306 agagctctcagggactaaaacacc 329
           ||||||| ||||||||||||||||
Sbjct: 24  agagctcccagggactaaaacacc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space:   687609
Effective search space used:   687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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