BAC Information

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BAC

Clone NameMSMg01-340K19
ChromosomeX (Build37)
Map Location 4,768,169 - 4,768,745
singlet/doubletsinglet
Overlap geneLOC100043935
Upstream geneLOC627187, LOC100042185, OTTMUSG00000016407, OTTMUSG00000016437, OTTMUSG00000016420, LOC547057, EG546327, EG668965, LOC546185, LOC100043933, LOC670673, LOC100042254, LOC100043934, LOC100042267, LOC100042275, LOC668967, LOC434724
Downstream geneLOC668968, LOC546182, Mycs, LOC668969, LOC668970, OTTMUSG00000016453, LOC627412, LOC436185, LOC668971, LOC100043936, LOC668972, Nudt11, LOC208428, AU022751, Nudt10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-340K19.T7 (MSMg01no340_k19.b1)MSMg01-340K19.TJ (MSMg01no340_k19.g1)
ACCAG454655AG454656
length744754
length of high quality
(start - end)
581 (45 - 625)490 (77 - 566)
definitionCHROMAT_FILE: MSMg01no340_k19.b1 PHD_FILE: MSMg01no340_k19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:44 2005CHROMAT_FILE: MSMg01no340_k19.g1 PHD_FILE: MSMg01no340_k19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:44 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGAAACCTGAAGAGAGCAGAGTGAGAAATTGTTCAGGAGAATGCAG
GTTCTCTCAGAGGGAAACAAAGTGCTATGAATATGTGAGTGCAGCTTTGC
ACAGAGGCCATTGTGCCTGTGAGTTCATGTTCCTGCTGAGGACAGATTGC
AATGGAGACAAAAGTGTAGGTGCCTGCTGATGTCTCGAGTTGAGGATTAA
CCTGTTAGTGCAGGTGACTGCAGGGGCCAGGGAAGGGACCTGGGCAAATA
AGTGCAGGAGCCTTCAGAAGACTAGGTTATCTGGGGACAGTGGGCTATAC
ACAGACAAGCTGGTCTCCAGTTGAGTTGAGGTCTGAACTCTAGTAGAACC
TGATGGGTGGCAATTCCCACCTACATGGGACAGAAGGTGTTCCCTCATGT
CTTCTGGCCCCCGGGCTCCTGTTGAATTTACCACCCCCACATACCCCACA
AGAGAGGATAGTGGCTAGCAGTCATGTACACAATGTCCCAAGCTTCTGAC
CTTCAGGCTAGACTTCTCCCAATTACCTAGCAACAACAAGATAACAAGTC
CTCTATAAGAGGGGCTGCTTGGCCCACTCCTCACTCTCTTAAGCTTTTAC
TTTCTTTACTCTCCCTCTTACTCTCTCTCCCTTACTCTTTTAAGCTTTTA
CTTTTCTTTAAACTCTCTCTAAGACCTCTCTCTCCTAAACTTCN
NCCGATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTTCTTGTGGCTGTCTTTTTTTC
GGTTTGTTGAAGGATTAATTTCTTGCTTTTTATACAGCGTAGTTTCTGTC
CTTGTATTGTTTTTTTTTTTTTTTTCTGTTATCATCCTTTGAAGGGCTGG
ATTAGTGGAATGATATTGTGTGAATTTGATTTTGTCGTGGAATACTTTGG
TTTCTCCATCTATGGTAATTGAAACTTTGCCTGGGTGCCGTGGTCTAAGC
TGGCATTTGTGTTCTCTTAGCGTCTGTATAACATCTGTCCAGGATCTTCT
GGCTTTCATAGTCTCTGGTGAAAAGTCTAGTGTAGTTCTGATAGGCCTGC
CTTTAAATGTTACTTGACCTTTTTCCTCACTGCTTTTAATATTCTATCTT
TATTTAGTGCATTTGTTGTTCTGATTATTATGTATTGGGAGGAATTTCTT
TTCTGGTTCAGTCTATTTGGAATTCTGTAGGCTTCTTATATATTCATGGG
CATCTCTTTCTTTAGGTTTGGGAAGCTTTCTTCTATCATTTTGTTGAAGA
TATTTGCTGGCCCTTTAAGTGAAAATCTTCATTCTCATCTACTCCTATTA
TCCATAGGGTTTGGCTTCCCCTTGGGCCCTGGAATTCCCCGGAAGTTTTG
AGGGGGGACCTTTTTGCCTTTTGCATTTGCTTTGAATGGTTTTCCCCAGT
TTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no340_k19.b1 MSMg01no340_k19.b1 CHROMAT_FILE:
MSMg01no340_k19.b1 PHD_FILE: MSMg01no340_k19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:44 2005
         (581 letters)



>mm_chrX_4767965_4768945
          Length = 981

 Score = 1002 bits (518), Expect = 0.0
 Identities = 563/578 (97%), Gaps = 2/578 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagaaacctgaagagagcagagtgagaaattgttcaggagaatgcaggttctctc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagaaacctgaagagagcagagtgagaaattgttcaggagaatgcaggttctctc 264

                                                                       
Query: 65  agagggaaacaaagtgctatgaatatgtgagtgcagctttgcacagaggccattgtgcct 124
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 265 agagggaaacaaagtgctatgaatatgtgtgtgcagctttgcacagaggccattgtgcct 324

                                                                       
Query: 125 gtgagttcatgttcctgctgaggacagattgcaatggagacaa-aagtgtaggtgcctgc 183
           |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 325 gtgagttcatgttcctgctgaggacagattgcaatggaga-aagaagtgtaggtgcctgc 383

                                                                       
Query: 184 tgatgtctcgagttgaggattaacctgttagtgcaggtgactgcaggggccagggaaggg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgatgtctcgagttgaggattaacctgttagtgcaggtgactgcaggggccagggaaggg 443

                                                                       
Query: 244 acctgggcaaataagtgcaggagccttcagaagactaggttatctggggacagtgggcta 303
           |||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||
Sbjct: 444 acctgggcaaataagtgcaggagccttcagaagacttggttatgtggggacattgggcta 503

                                                                       
Query: 304 tacacagacaagctggtctccagttgagttgaggtctgaactctagtagaacctgatggg 363
            ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 504 aacacagacaagctggtctccagttgagttgaggtctgaactctagtagaacttgatggg 563

                                                                       
Query: 364 tggcaattcccacctacatgggacagaaggtgttccctcatgtcttctggcccccgggct 423
           |||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||
Sbjct: 564 tggcaattcccacctacatgggacagaaggcgttcccttatgtcttctggccccctggct 623

                                                                       
Query: 424 cctgttgaatttaccacccccacataccccacaagagaggatagtggctagcagtcatgt 483
           ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 624 cctgttgaagttaccacccccacattccccacaagagaggatagtggctagcagtcatgt 683

                                                                       
Query: 484 acacaatgtcccaagcttctgaccttcaggctagacttctcccaattacctagcaacaac 543
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 684 acacaatgtcccaagcttctgaccttcaggctagacttctcccagttacctagcaacaac 743

                                                 
Query: 544 aagataacaagtcctctataagaggggctgcttggccc 581
           |||||||||||||| |||||||||||||||||||||||
Sbjct: 744 aagataacaagtccactataagaggggctgcttggccc 781


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space:   554441
Effective search space used:   554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)