TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATATGTTTTGCTGTGTCAGTTATTTAATTTAGCCAGGGAGAATGCC
TGTGAGGTTAAACTAGAATTAAGTTTTAATTATTAGTTCATATGCTAAAA
AACATTTTTAGAAAGGAAATGTACCTTTCGAAGGGATTGATTTTCAAAGA
AATGATCATTTGTGAAACAGCCACTACTCAAATTAATGCAATGATAATTC
CTAAGCAGAAGAAAAAGGGCCTAATTATCTCATCTGCTTACAATGTATAT
TCATTCTTTCACATTACAATACTATACTTTTGGCTCACTACAGTCTGAAA
TCAATTAACATAATTCTAGGCCACTTTTATAAAAGTTTGTAGAGAACAAT
AGCTCATTTTATTTATTCTGAAGGGTGGATATATGAAGAATCCTGGGTTT
TTCCCCCTATGGTACTTAGTAAATGAATGACTTTATGGCCTTATTTTATT
AACCTTGATCCTATAACATTAACTCCCCCCCGTTCTTTCCATTCTCTGTC
CAGAAATCACTTTATATCTATCGAAGGGTAAAAAATTTATGCTCACCCTC
ACTTATCCTATTCTGGCCAAAATTCAACCCGCAAAAATCTTTTCTGTCTC
TCGCCTTCTGGGCCCTTTTATTCCTCCCGTACCCCACCTATTTTTTATTT
TTTCCCCCATTTTTTTTGTCCCTTTTTTCTTCTCTTCGCCTATATTTCTT
TACAAATATTATTCGCTG

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATGCAGTTGAATCCTTCTCAACAGTC
TGTTTTACGGGAACCTTTATTACCGTGACCCGCAGTTCTGGTTCCGGAAT
GAGGGATCTTCCTTGCGCCGGTAATGGTTAACTCCCGTCCCGAGTTTTCT
TGTATTTTCTCGTCCCGGGTTTCAGCACCAACTCTTATACGCGTTCTCAC
GACCGGCCAGGAAGAACACAACAAACCAGAATCTTCTGCGGCAAAACTTT
ATTGCTTACATCTTCAGGAGCCAGGAGCGCAAGCCCCAAGCCCCAAAAAC
GAAAGGTCCCCCAAAACGAAAGCGAAACCCTGTCCCTTTAAGGAGAATTA
TCCTTCGCCTAGGACGCATCACTCCCTGATTGGCTGCAGCCCATGGCCGA
GTAAAGGCAGAGTATATGTAGTGGGAAAATACCCTTGGCACATGATCAGA
TTATTTGTTTACCACTTACAACACCGGATGTTTTCCCCCTTCTTGTGACG
GTGAAAATGCGCGTTGGTTCCCATCATTGGAGTTCCAGCTTAAATTTCCT
GTTTTTCCCCTCAATATTCGTATCCGCCCCCCTATTTTTTTTTTTTTCTT
CCCTTTTTTTTCTCTCATCTTTTCCCCCCTTTCCTCCTTTCTTATTTCCT
TTTCTCTATCCTATATCTCTCCTTCCTTTTTTTCCCCTTTCTTTCCCCTC
TTCCCCTCTTTTCCTTCTTCT

Query= MSMg01no341_d08.b1 MSMg01no341_d08.b1 CHROMAT_FILE:
MSMg01no341_d08.b1 PHD_FILE: MSMg01no341_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:23 2005
         (428 letters)



>mm_chrX_86109463_86110290
          Length = 828

 Score =  789 bits (408), Expect = 0.0
 Identities = 420/424 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatatgttttgctgtgtcagttatttaatttagccagggagaatgcctgtgaggt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatatgttttgctgtgtcagttatttaatttagccagggagaatgcctgtgaggt 264

                                                                       
Query: 65  taaactagaattaagttttaattattagttcatatgctaaaaaacatttttagaaaggaa 124
           ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 265 taaacgagaattaagttttaattattagttcatatgctaaaaaacattttaagaaaggaa 324

                                                                       
Query: 125 atgtacctttcgaagggattgattttcaaagaaatgatcatttgtgaaacagccactact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgtacctttcgaagggattgattttcaaagaaatgatcatttgtgaaacagccactact 384

                                                                       
Query: 185 caaattaatgcaatgataattcctaagcagaagaaaaagggcctaattatctcatctgct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caaattaatgcaatgataattcctaagcagaagaaaaagggcctaattatctcatctgct 444

                                                                       
Query: 245 tacaatgtatattcattctttcacattacaatactatacttttggctcactacagtctga 304
           |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 445 tacaatgtatattcattcttacacattacaatactacacttttggctcactacagtctga 504

                                                                       
Query: 305 aatcaattaacataattctaggccacttttataaaagtttgtagagaacaatagctcatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aatcaattaacataattctaggccacttttataaaagtttgtagagaacaatagctcatt 564

                                                                       
Query: 365 ttatttattctgaagggtggatatatgaagaatcctgggtttttccccctatggtactta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttatttattctgaagggtggatatatgaagaatcctgggtttttccccctatggtactta 624

               
Query: 425 gtaa 428
           ||||
Sbjct: 625 gtaa 628


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space:   343161
Effective search space used:   343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)