BAC Information

Click to search

BAC

Clone NameMSMg01-343F14
ChromosomeX (Build37)
Map Location 151,923,468 - 152,080,916
singlet/doubletdoublet
Overlap geneLOC667394, Ptchd1
Upstream geneEG434881, LOC100040899, LOC667331, LOC100040925, LOC100040937, Magea6, Magea3, LOC626034, Magea8, Magea2, Magea5, Magea1, 1700042B14Rik, LOC245676, Amd-ps1, LOC667369, Sat1, Acot9, LOC667383, Prdx4
Downstream gene4930503H13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343F14.T7 (MSMg01no343_f14.b1)MSMg01-343F14.TJ (MSMg01no343_f14.g1)
ACCAG456681AG456682
length803775
length of high quality
(start - end)		393 (34 - 426)390 (64 - 453)
definitionCHROMAT_FILE: MSMg01no343_f14.b1 PHD_FILE: MSMg01no343_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:09 2005CHROMAT_FILE: MSMg01no343_f14.g1 PHD_FILE: MSMg01no343_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(152,080,599 - 152,080,916)(151,923,468 - 151,923,857)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTGAAGC
CTATTAGTGTGATTAAGTGTCACAGGTTCAGATGAGACTTTAAACCATGT
CATTTCCTGCAAGACAGGAAAGTCTATTGCAATAAAAAGTTGCCAACACT
GGGGGCTTGGGGAGATGCCTCAGTCAGTAAATTATCTGCTGTACAAACAT
GAGGAACTGAGTTTAGGGTACAAAACCACATGTAAAAATCTTGATGTGGT
AACAGATAACTGTAGCCCCAGCACTGGGAGTGGAGAGGGAGGAAGTGGAG
ACACGCCGATCCCTGAAATGCATTGGCCAGTCAACCTACCTATGCCATTG
AGCTTCAGTTTCATTTAGAAGGAAAGACAACCTATGCCAATCTCAGGTCC
TGCACATGCATGCAAGCAATACCACAAATACCCTAAAAGATATCAACATC
ATCCTGAAGTTGCCCTGATCCCAGCACTGATACTTAAATGTAGAAAATGT
TACATTAATGTAGCCTCGCTATGCTAAACCCTCTCTCCAAATGGGTTTAT
TTTTTTTTGGGTCTCCTATGAAGTATTTCGCCCTCCTAAGTATATTGTTA
ATCATTGTTTTATTTCTTTCTAATACCGACCTTAGAAACGCCCTCCTCTT
TCTTTCTCGTATCTCACTTATCCCTTTTATTTCATTTTGTCTTGTTCACA
TTCCCCTCCTTCTTTTCTTCATTGCCTTCCGACTCAATCTTACCCCCTTT
TACTAGCCTCCTCTTTTCTCTTACCCTCCTCTCTCTATTTCTCACAAATT
CTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXAGAAAATTCTGCCTGATATTTGGTGGTTCAAATTAGT
GTTTATCACTGAGCTCTGTGATGACTGTATTTTATCAGTTAGGGAAATAA
CTAACTCTGCCTGAAGTGGCACAGACATGATGGAAAAGCAGAGCTGCGGC
AGGCTTTGATCTCAGAATAATTCTAAATCCAGGGTTATTTCCACTATGTC
TCAAGTGAAAATGATCAGGTGTCACTGAGCTTTAGGCAAGGAGAGGACAC
ACATATAACTTTAGAAGTCCCTGAAATGCTTGTGCAGTCTTTCAGAGGGA
GAATAGAATCATACAGCAGCTATTCTCTGGAAAATACAAATCCTGGTAGC
CACAAACACAAGGTTCTGGTTCCAAGGAGCAAGTAGCACAGAGAACAAGT
TAAGGAGGCTTACACATCGTCCTCATTTAGTGTCTTCTCTTAGAATTTGA
AAACTTCCCTAAGAAATGGCCCTCTTTCCCCCTGGTGCCCCCCCCTCCCC
CTTCTAATTTTCTGGGTGGGAAAAATCACCCCGCCCTCCCCGGTGGGACT
TTTTTCCCTCTCTCTTGTTTTTCCCCACCCTCCGGCCCTTTTCCTTTTAT
AATTCTCCCCTTTTCAAACTCCCTTTTCTCTCTGTTGTTCCTTTGCTCAT
TCTGTTTCGCTTCCATTCTTATCCAACCTACTCTTTATATGTCATTTCTT
TCATCCCCTTCCCTCTTCGTTCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_f14.b1 MSMg01no343_f14.b1 CHROMAT_FILE:
MSMg01no343_f14.b1 PHD_FILE: MSMg01no343_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:09 2005
         (393 letters)



>mm_chrX_152080599_152081391
          Length = 793

 Score =  576 bits (298), Expect = e-169
 Identities = 313/318 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttgaagcctattagtgtgattaagtgtcacaggttcagatgagactttaaacca 64
           |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gaattcttgaagccaattagcgtgattaagtgtcacaggttcagatgagactttaaacca 259

                                                                       
Query: 65  tgtcatttcctgcaagacaggaaagtctattgcaataaaaagttgccaacactgggggct 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 258 tgtcatttcctgcaagacaggaaagtctattgcaataaaaagttgccaacactgggagct 199

                                                                       
Query: 125 tggggagatgcctcagtcagtaaattatctgctgtacaaacatgaggaactgagtttagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 tggggagatgcctcagtcagtaaattatctgctgtacaaacatgaggaactgagtttagg 139

                                                                       
Query: 185 gtacaaaaccacatgtaaaaatcttgatgtggtaacagataactgtagccccagcactgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 gtacaaaaccacatgtaaaaatcttgatgtggtaacagataactgtagccccagcactgg 79

                                                                       
Query: 245 gagtggagagggaggaagtggagacacgccgatccctgaaatgcattggccagtcaacct 304
           |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 78  gagtggagagggaggaagtggagacacgccgatccctgaaattcattggccagccaacct 19

                             
Query: 305 acctatgccattgagctt 322
           ||||||||||||||||||
Sbjct: 18  acctatgccattgagctt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 793
Length adjustment: 9
Effective length of query: 384
Effective length of database: 784
Effective search space:   301056
Effective search space used:   301056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no343_f14.g1 MSMg01no343_f14.g1 CHROMAT_FILE:
MSMg01no343_f14.g1 PHD_FILE: MSMg01no343_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:09 2005
         (390 letters)



>mm_chrX_151923268_151924057
          Length = 790

 Score =  746 bits (386), Expect = 0.0
 Identities = 389/390 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaaattctgcctgatatttggtggttcaaattagtgtttatcactgagctctgtgatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaaaattctgcctgatatttggtggttcaaattagtgtttatcactgagctctgtgatg 260

                                                                       
Query: 61  actgtattttatcagttagggaaataactaactctgcctgaagtggcacagacatgatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actgtattttatcagttagggaaataactaactctgcctgaagtggcacagacatgatgg 320

                                                                       
Query: 121 aaaagcagagctgcggcaggctttgatctcagaataattctaaatccagggttatttcca 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 aaaagcagagctgcggcaggctttgatctcagaataatgctaaatccagggttatttcca 380

                                                                       
Query: 181 ctatgtctcaagtgaaaatgatcaggtgtcactgagctttaggcaaggagaggacacaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctatgtctcaagtgaaaatgatcaggtgtcactgagctttaggcaaggagaggacacaca 440

                                                                       
Query: 241 tataactttagaagtccctgaaatgcttgtgcagtctttcagagggagaatagaatcata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tataactttagaagtccctgaaatgcttgtgcagtctttcagagggagaatagaatcata 500

                                                                       
Query: 301 cagcagctattctctggaaaatacaaatcctggtagccacaaacacaaggttctggttcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagcagctattctctggaaaatacaaatcctggtagccacaaacacaaggttctggttcc 560

                                         
Query: 361 aaggagcaagtagcacagagaacaagttaa 390
           ||||||||||||||||||||||||||||||
Sbjct: 561 aaggagcaagtagcacagagaacaagttaa 590


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 790
Length adjustment: 9
Effective length of query: 381
Effective length of database: 781
Effective search space:   297561
Effective search space used:   297561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |