BAC Information

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BAC

Clone NameMSMg01-343O14
ChromosomeX (Build37)
Map Location 89,179,520 - 89,179,787
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC670074, LOC667972, LOC667976, Mageb2, EG278167, EG667988, EG667993, EG385489, 1700084M14Rik, EG236891, LOC629542, Mageb5, LOC673766, LOC633484, LOC674396, EG278087
Downstream geneMageb1, EG236892, EG236893, Mageb18, EG436259, EG668061, EG546347, LOC629568
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343O14.T7 (MSMg01no343_o14.b1)MSMg01-343O14.TJ (MSMg01no343_o14.g1)
ACCAG457102AG457103
length781757
length of high quality
(start - end)
268 (39 - 306)389 (64 - 452)
definitionCHROMAT_FILE: MSMg01no343_o14.b1 PHD_FILE: MSMg01no343_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:55 2005CHROMAT_FILE: MSMg01no343_o14.g1 PHD_FILE: MSMg01no343_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:55 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
GCGCTTTACGACTCACTATAGTGCGAGAATGGCGCGGAATTCTGACGAAT
TGCCAGAGACCCGGCCGTCGCTAGGGCAGGGTGGGTTATGAATCTAGAAA
ACTATCATGGGATGTTATAGTTTTTAATCTAGTCATCACCCGCGAAAGAT
TCTTACCAGAGTAAAGGCCATTCTTCTTGGCTCAAAACCTAATCGTACAG
GTTGATCCGTCCTCAAAGAGGAAGTTAAGATCATCCACTTCCGGTCACCA
GTCACCCGCCCTGGAAGCACGCCTCAGGAGCTTTGATCATCTAAAGGGAA
GCCCTGGTTTTTAGGGGCTGAACTAATCCATCTCCTTTGTTTTGTTGTTG
TTGTTCTGGGGGAGGGGAATTCCCTGATAACTCAGGTACTTTATTTTTCT
TATTTCCCCCCCCCATTCATAATTTCTTCCCCTCTTTGTGTCCCTTTTTT
TGCACTAGCACCTTTTTTTTTTTCCTTTTTTTCTCTCGCCTTGTATTCTT
TTTCCTCTGTATTTTCTCCCTTTTTTCTTCTGTCTTTTATATTCTACCTT
TTCCCCTTCGGTTTTCCTTTTCTTAATTTACTATTTTTCTTTCTTCTTTT
TCTTCTTTTGCATCTGTCCCCTCCCCTTTTTTCCTCTCCCTATTATTTTT
TTTCTCTTTCATAATTTTTCTTTTTTTTTCCTCTCTATTTTCCCTATCGC
CCTATTTTTCTCTGATTTTGTCTCCCGTCCCTTATATTATTGATTTTTTG
TTCCCATCTCTACCTATTCTCTTCCCCGTCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTA
TTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATAT
TAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTG
GTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGG
AGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCAT
TGCTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTT
TCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATAAGCACT
TAGTATTTATTCGTATTGAGATCCACTCAGGTCAAAATTGTGTGTGTTTG
TGTGTGTGTGTGCGCGCGTTTCTCCCTTCTATTTACCGTTTCTCTCTTTT
TTATTTATTGTCATCTTTTCCTGGTTTTCTTCCTTCGGTGCTTTTTTTTT
TTTTTTCATCTCCTCTTTTACTCATTCTAACTTTCCCCTTTTATCCTTCT
TTTTTACACTCGAAGTAGCTTCGTCTGTTATTATTTTCTTTCTTCTTCGT
TCTCGTCAATCTTCTTTTTATCCCGTTTTTTGTTACTTTTTCTGTCTATG
TCCTGATTTTTTGTTCTCGTTTCTTATTCTTCTTCTCCTTCCTTTTTTGT
TTTTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_o14.b1 MSMg01no343_o14.b1 CHROMAT_FILE:
MSMg01no343_o14.b1 PHD_FILE: MSMg01no343_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:55 2005
         (268 letters)



>mm_chrX_89179321_89179987
          Length = 667

 Score =  468 bits (242), Expect = e-136
 Identities = 262/272 (96%), Gaps = 8/272 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctgacgaattgc----cagagacccggccgtcgctagggcagggtgggttatgaatc 56
           |||||||||||   |    |||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 attctgacgaa---caaggcagagacccggccgtcgctagggcagggtgggttatgaatc 256

                                                                       
Query: 57  tagaaaactatcatgggatgttatagtttttaatctagtcatcacccgcgaaagattctt 116
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 257 tagaaaactatcatgggatgttatagtttttaatctagtcatctcccgcgaaagattctt 316

                                                                       
Query: 117 accagagtaaaggccattcttcttggctcaaaacctaatcgtacaggttgatccgtcctc 176
           ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 317 accagagtaaaggccatgcttcttggctcaaa-cctaatcgtacaggttgatccgtcctc 375

                                                                       
Query: 177 aaagaggaagttaagatcatccacttccggtcaccagtcacccgccctggaagcacgcct 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 aaagaggaagttaagatcatccacttccggtcaccagtcacccgccctggaagcacgcct 435

                                           
Query: 237 caggagctttgatcatctaaagggaagccctg 268
           ||||||||||||||||||||||||||||||||
Sbjct: 436 caggagctttgatcatctaaagggaagccctg 467


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 667
Length adjustment: 9
Effective length of query: 259
Effective length of database: 658
Effective search space:   170422
Effective search space used:   170422
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)