BAC Information

Click to search

BAC

Clone NameMSMg01-343P09
ChromosomeX (Build37)
Map Location 101,628,240 - 101,628,683
singlet/doubletsinglet
Overlap genenone
Upstream geneTsix, Xist, Rps12-ps1, LOC668406, LOC676246, ENSMUSG00000043661, LOC668412, LOC668415, B230206F22Rik, Cnbp2, LOC100042640, Slc16a2, EG621381, EG668426, LOC668430, Rnf12, C77370, Vcp-ps, EG621542
Downstream geneUprt, Zdhhc15, Magee2, LOC622098, LOC676331, 5530601H04Rik, 2610029G23Rik, Magee1, LOC622159, LOC668454, E530001F21Rik, LOC622202, LOC100043213
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343P09.T7 (MSMg01no343_p09.b1)MSMg01-343P09.TJ (MSMg01no343_p09.g1)
ACCAG457140AG457141
length745764
length of high quality
(start - end)		448 (35 - 482)363 (66 - 428)
definitionCHROMAT_FILE: MSMg01no343_p09.b1 PHD_FILE: MSMg01no343_p09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:00 2005CHROMAT_FILE: MSMg01no343_p09.g1 PHD_FILE: MSMg01no343_p09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGGTGC
CTATACTTGGCTATGTGGTCTGCCAGACCCTAACTGCAACATGTTCCAGA
TGATGCTCACTCTCTTTCCCCAAACTTCTCATCCACCTACCCCAAGACCT
ATTCCTCTATAAGCCTCTCTTTTGACTAAGTATACTGTCATCTTCTCATC
ATCATGATTAGCAGGCTCCTTACTTCTTTCATATTTAAGCAGTCACCAAA
TCATCTCCAATCTACCCCTACAATATTCAGTCTGCCCTCTCCTTCTCATT
TTTTCATCTACTACCATTTTCCAGTCCCTCTTATCTTTTACGTAAACTGT
TCCCTAGCCTACAAACAGGCTCTTTGTTTTTCCTTAGTATCCCTTATTCC
TGGTGGCCACCCCTCTCACTATTGCCAGTTAGCTTCCTAACAAGGTAAAT
CATAGCCATGCTCCTCATATGTCTTCTCATTAATTACAGAATAATATCTG
TTACCCTGAAGTAATAGGTCTCTATTGATTATTAGTACAGACCTGATAAT
ATAGCAGATCTGCCTGAATCTTTGAGAGCCACTTCCTCCTTGACAGTTTT
TAAGCTATCTCTCTCACAACTTTTGCTTCATCCTTATATATACGTGACCC
CCTTATTGCTCTTCCTAATCTTGCTTCATGTTTCTTTATATTATTATCAC
CGACAACCATTTCTTTTCAAATTTCATACATCATAATGCCCTATT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTGCAGTCTCTTCTTCTCTGCACTTTGATCATTAAG
CACACTCTGAACTAATGGATTGAATAGGAAATGGCAGGAAATTTTAAAAA
TACTTTGAGGGGAGTGAAACAGAGATATGACACAATAAAAAGTATAGGAT
GTAATCAAGCAGTGCTCACATGAAAATTTATAGTTGTAAAAACATTTAAA
GGAAGAAATATCTCAAATAATCTATTTTGATGTGTTAAAGGACTGTATAA
TGAAGAGTGACCAAAGGTTAAAAAAAAATGACTGTTACAAGGGAAATAAA
CCAAACAGTAAGATGACCAACCAAAGCATGAAAGACAGTCTTTTGTTTTG
TTTTGTTTTGTTTTTTGTTTTTTGTTTTTTGGTTTTTGGTTTTTCAAGAC
AGGNTTTCTCTGTGTANTCCTGTCTGTCCTGGAACTCACTCTGTATACCA
GGCTGGCCTTTGACTCAGAAATCCACCTGCCTCTGTCTCCCCAGTGGGGG
GGATAAAAGGCCACCCCCGCCCCAACTAAAAGAAAATCTTTTTAACCCTT
AAATTTTTGTGGTTCGGCCCCGTAAACTTAAAGCAATCTTATATTTTCCC
CCCTCTCTCAAAATTTTCCTCTGCTGGATTTCCGACAAACCCCATTTTCC
TTTTTTTCTTCCCCCAATTATTATTATTTTTTGCGCCACTTCTATAAATC
TTCAGCCTCCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_p09.b1 MSMg01no343_p09.b1 CHROMAT_FILE:
MSMg01no343_p09.b1 PHD_FILE: MSMg01no343_p09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:00 2005
         (448 letters)



>mm_chrX_101628036_101628883
          Length = 848

 Score =  814 bits (421), Expect = 0.0
 Identities = 439/445 (98%), Gaps = 2/445 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaggtgcctatacttggctatgtggtctgccagaccctaactgcaacatgttcca 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaggtgccaatacttggctatgtggtctgccagaccctaactgcaacatgttcca 264

                                                                       
Query: 65  gatgatgctcactctctttccccaaacttctcatccacctaccccaagacctattcctct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gatgatgctcactctctttccccaaacttctcatccacctaccccaagacctattcctct 324

                                                                       
Query: 125 ataagcctctcttttgactaagtatactgtcatcttctcatcatcatgattagcaggctc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ataagcctctcttttgactaagtatactgtcatcttctcatcatcatgattagcaggctc 384

                                                                       
Query: 185 cttacttctttcatatttaagcagtcaccaaatcatctccaatctacccctacaatattc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttacttctttcatatttaagcagtcaccaaatcatctccaatctacccctacaatattc 444

                                                                       
Query: 245 agtctgccctctccttctcattttttc-atctactaccattttccagtccctcttatctt 303
           ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 445 agtctgccctctccttctcattttttcca-ctactaccattttccagtccctcttatctt 503

                                                                       
Query: 304 ttacgtaaactgttccctagcctacaaacaggctctttgtttttccttagtatcccttat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttacgtaaactgttccctagcctacaaacaggctctttgtttttccttagtatcccttat 563

                                                                       
Query: 364 tcctggtggccacccctctcactattgccagttagcttcctaacaaggtaaatcatagcc 423
           ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tcctggtggtcacccttctcactattgccagttagcttcctaacaaggtaaatcatagcc 623

                                    
Query: 424 atgctcctcatatgtcttctcatta 448
           |||||||||| ||||||||||||||
Sbjct: 624 atgctcctcagatgtcttctcatta 648


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space:   367044
Effective search space used:   367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |