BAC Information

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BAC

Clone NameMSMg01-344F22
ChromosomeX (Build37)
Map Location 162,488,617 - 162,489,078
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC627045, Glra2, LOC100040753
Downstream geneGemin8, Gpm6b, Ofd1, Trappc2, Rab9, LOC100040795, A630018P17Rik, Egfl6, LOC100041912, LOC641660, LOC667791
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344F22.T7 (MSMg01no344_f22.b1)MSMg01-344F22.TJ (MSMg01no344_f22.g1)
ACCAG457451AG457452
length788750
length of high quality
(start - end)
427 (54 - 480)462 (71 - 532)
definitionCHROMAT_FILE: MSMg01no344_f22.b1 PHD_FILE: MSMg01no344_f22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:32 2005CHROMAT_FILE: MSMg01no344_f22.g1 PHD_FILE: MSMg01no344_f22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTGTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAAGGCCTTTACCTAAACATAGTAAGAGCAATATACAG
CAAACCAGTAGCCAACATCAAACTCAATGGAGAGATACTTGAAGAAATCC
CACTAAAATTAGGGAGTAGACAAGGCTACCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCTATACAGT
ATAGTACTTGAAATTCTATCTAGAGCAATTAGACAACAAAATGAGGTTAT
AGGGATATAAATTTTAAAGGAAGAAGTCAAAATATCACTATTTGCAGATG
ATATGATAGTATATATAAGTGACCCCAAAAATTCCACCAGAGAACTCCTA
AACCTGATAAACAGCTGCAGTGCAGTAGCTGGATATAAAATCATCTCAAA
CAAATCATTTGTCTTTCTCTACACAAAGGATAAAATGGCTGAGAAAGAAA
TAATGGAAACAGCACCCTTCCCAATAGTCACAAAAACTATAAAATACCTT
CCGTGCGACTCTAACTAAGGAAGGGAAATATCTGGATGGAAAAGAACTTT
CCAGTTTCCGAATTTATGACCTAGAAATAATTTGGGAATATATTCCCCAT
GCCCCCGGGATTGGGTAAATATTAAAATAGAAAAAATGGGCCTTTTTTTT
CGAAAAAAATTTTATAAAATTCAAGGGGTGGCCGCTCTTATAATTTTCTA
GTTTTATGTTCTTCTGTAAATCTAATACGGGATTGTTG
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTGAGTAAACAGTTCAGTCAAAACCCACC
AGGTGCCCAATATCCCAACCCATAAAGTCAACTCTGACTTTTGCATCCTG
CAGAGAATCATTTTTACCAAGGCTGGCAATAGCTAGAGCTGGGAGACAGC
ACATATTTGTCTTAGGGCGCTCCCTTTCCTTCCTTTCCTGGAAAACTGTC
AGACTCAGTGGGGTTTTTCTTCATCATCAAAACACATCTGGCTTGTGTCC
ATTTACTGAGGGTTCTACTGTCCTGAAGAAAGTGTGCCATTATGTATCAA
TCAACTGAGAACAATCCTTTACTATGAGTCAGCCAATCGATAAAATCACA
TTTCCCAAATCACTCATGTCTTTTAGAGTGATGCTAAATATGCAGCATGG
GCAGTAAGATTAGATAATGTTGTCTTTATTATTATGCTTTCTTTTCCTTT
TCCATGGCTGCACTTGTCTATCAATGAATATGGAAAAGGAGAACTTTGAC
TTAAGTCAGTTGTTCATTGTTTGGTTTTATAATTTCTGGGGCCAATACTG
AATAATTTTATGTTCATGCCATGACCACAGTGTATCTGTAAAAGAATTTA
TGGTTCCTCTTTTCCCGGGACAAAAAAAGAAAAAATTTCTTTTCAAAGGA
CAGGGAAGGTATCCTTGAAAACGAGGCCTTTAGGGAGAAATTTTTTTTTC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_f22.g1 MSMg01no344_f22.g1 CHROMAT_FILE:
MSMg01no344_f22.g1 PHD_FILE: MSMg01no344_f22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:32 2005
         (462 letters)



>mm_chrX_162488417_162489278
          Length = 862

 Score =  878 bits (454), Expect = 0.0
 Identities = 460/462 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgagtaaacagttcagtcaaaacccaccaggtgcccaatatcccaacccataaagtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 tctgagtaaacagttcagtcaaaacccaccaggtgcccaatatcccaacccataaagtca 603

                                                                       
Query: 61  actctgacttttgcatcctgcagagaatcatttttaccaaggctggcaatagctagagct 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 602 actctgacttttgcatcctgcagagaattatttttaccaaggctggcaatagctagagct 543

                                                                       
Query: 121 gggagacagcacatatttgtcttagggcgctccctttccttcctttcctggaaaactgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 gggagacagcacatatttgtcttagggcgctccctttccttcctttcctggaaaactgtc 483

                                                                       
Query: 181 agactcagtggggtttttcttcatcatcaaaacacatctggcttgtgtccatttactgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 agactcagtggggtttttcttcatcatcaaaacacatctggcttgtgtccatttactgag 423

                                                                       
Query: 241 ggttctactgtcctgaagaaagtgtgccattatgtatcaatcaactgagaacaatccttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ggttctactgtcctgaagaaagtgtgccattatgtatcaatcaactgagaacaatccttt 363

                                                                       
Query: 301 actatgagtcagccaatcgataaaatcacatttcccaaatcactcatgtcttttagagtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 actatgagtcagccaatcgataaaatcacatttcccaaatcactcatgtcttttagagtg 303

                                                                       
Query: 361 atgctaaatatgcagcatgggcagtaagattagataatgttgtctttattattatgcttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 atgctaaatatgcagcatgggcagtaagattagataatgttgtctttattattatgcttt 243

                                                     
Query: 421 cttttccttttccatggctgcacttgtctatcaatgaatatg 462
           ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 242 cttttccttttccatggctacacttgtctatcaatgaatatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)