Query= MSMg01no344_h13.b1 MSMg01no344_h13.b1 CHROMAT_FILE:
MSMg01no344_h13.b1 PHD_FILE: MSMg01no344_h13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:40 2005
(479 letters)
>mm_chrX_52653537_52654415
Length = 879
Score = 137 bits (71), Expect = 1e-36
Identities = 116/131 (88%), Gaps = 6/131 (4%)
Strand = Plus / Minus
Query: 58 cccagcaattgtgttcctcttttcttgcctttgggagggcctcagcaaacc-tagc-gct 115
|||||||||||| || ||||| | |||||| | |||||| ||||||||| || | |||
Sbjct: 385 cccagcaattgttttaatctttcccagccttttgtagggcc-cagcaaacctta-cagct 328
Query: 116 ttctgagcttcctaaaacttggaagttttattt-gcttctgagttgtagggtcctccatc 174
||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||
Sbjct: 327 ttctgagcttcctaaaacttgcaagttttatttag-ttctgagttgtagggtcctccatc 269
Query: 175 ctccttatagg 185
|||||||||||
Sbjct: 268 ctccttatagg 258
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space: 407561
Effective search space used: 407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no344_h13.g1 MSMg01no344_h13.g1 CHROMAT_FILE:
MSMg01no344_h13.g1 PHD_FILE: MSMg01no344_h13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:40 2005
(515 letters)
>mm_chrX_53358124_53359035
Length = 912
Score = 366 bits (189), Expect = e-105
Identities = 418/501 (83%), Gaps = 21/501 (4%)
Strand = Plus / Minus
Query: 1 ctactcaaagtcattggagacaacagcaaatctgttttgtccgaatggagaatggatgag 60
|||| ||||||| ||||||||||||| | || | ||||| | |||||||||||| |||
Sbjct: 494 ctacccaaagtctttggagacaacagggattccg-tttgttctaatggagaatgggggag 436
Query: 61 gatttgtgctccattaaaaaggtcaataaattgactaatttgattcctgcctgtatattt 120
||| ||||||||||||||||||| || ||| |||| |||||| |||| |||| |||||
Sbjct: 435 tattagtgctccattaaaaaggtccttacattcactagtttgatgcctgtctgtctattt 376
Query: 121 gtgtgtgctttgtacttttttctgctttgtgttgtgctctgtgttcttgattattacctc 180
| ||||||| ||||||||| |||||| ||||||||| |||||||| ||| || || |||
Sbjct: 375 gagtgtgctatgtacttttgtctgctgtgtgttgtgttctgtgttattggctactaactc 316
Query: 181 tagggtccttaccatacttgcaaaatgaaacatttctcagttggaaaagctctcattttt 240
|| ||||||||||||||||||||||||||| ||||||| ||||| || |||| ||
Sbjct: 315 tacggtccttaccatacttgcaaaatgaaa-----ctcagtttgaaaatctttcatattc 261
Query: 241 ttactctgtatacaatatgattcttt-aaaaaata--agtttttgattcctttgtactaa 297
| ||||||||||||||||||||||| |||||||| ||||| ||| |||||||||
Sbjct: 260 gtcctctgtatacaatatgattctttaaaaaaatatcagtttatgagacctttgtac--- 204
Query: 298 tagtaagatcaaaatttctgggaagacacttttcattgaaaatacagt-ttttcattcaa 356
||| ||| | |||| | |||||| |||||| |||||||||||| | ||||||||||
Sbjct: 203 ---taacatctacattt-ttggaagatacttttaattgaaaataca-tcttttcattcag 149
Query: 357 tagattcagattactgtccccccaaatccttctacaacctctccacttctcgacccaccc 416
|| |||| |||||| |||||||||| |||||||| | |||||||||||||| ||||||||
Sbjct: 148 tacattctgattacagtccccccaactccttctatatcctctccacttctctacccaccc 89
Query: 417 aaattcacactttttctttctccctttattaaaatacaaacaggcatctaaataataatg 476
|||||||||| |||||||| | |||||||| |||||||||||| ||||||||||| |||
Sbjct: 88 aaattcacac-ttttctttttttctttattagaatacaaacaggtatctaaataatgatg 30
Query: 477 atac-tattaatgatactaat 496
|||| ||| |||||||||||
Sbjct: 29 atacaaatt-atgatactaat 10
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 912
Length adjustment: 10
Effective length of query: 505
Effective length of database: 902
Effective search space: 455510
Effective search space used: 455510
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
